Protein Model on 3rg1_A_1_E_1 (TEMPLATE: 3rg1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [594 aa] CD180 molecule :A6QNK7_BOVIN
2 b E 1 (B) polymer(polypeptide(L)) [599 aa] CD180 molecule :A6QNK7_BOVIN 378V(A) 380Q(H) (identity: 0.0 %/31.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3rg1_A_1 identity=31.2%
queryA       212:SLSHVPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASIN-IDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNM: 310
                : *   *  **     *  *      *    *  ****  ***     **               **      **   **    *    *           :
3rg1_A_1      22:GLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLT----RC--------------QINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGP: 103
SecStr          :  SS  TTS TT  EEE  S   SEE TTTTSS TT SEEE T----TS--------------   EE TTTTTT TT  EEE TT    EE TTTT   :    
ExpBur          :ebeebeeebeeebeebebbebebeebeeebbeebeebeebbbb----eb--------------ebeebeeebbeebeebebbbbebbebeebbeebbbeb:    

queryA       311:PHLKVLDLEFNYLVGEIASGAFLTM--LPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQ: 408
                :  ** *   *    * *    *     *  ** * *  * *       **   **     *  *             *   * *  ***  *   * ** :
3rg1_A_1     104:KFLKHL---FLTQTG-ISNLEFIPVHNLENLESLHLGSNHISS-----INLPENFPTQ-NLKVLDFQNNAIHYISRKDTNSLEQATNLS-LNFNGNDIKG: 192
SecStr          :S   EE---E TTS -   GGGS  TT TT SEEE TTSS   -----    TT   T-T  EEE  SS   EE HHHHHTTTT SSEE-EE TT    E:    
ExpBur          :eebeeb---ebeebe-beebeebbeebbeebebbbbbebebee-----bebbeebebe-ebeebbbeebebeebbeebbeebeebeebe-bbbbebebeb:    
Contact         :                                                                     b b                            

queryA       409:ID-----FKLFQNFS-----NLEIIY--LSENRISPL----VKDTRQSYANSSSFQR---------HIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYG: 483
                :*       * **        ** **   *       *      **   *  *  *              * *  *      * *  ***       **  :
3rg1_A_1     193:IEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLS---SSTFRCFTRVQELDLTAAHL: 289
SecStr          :E TTTT STTEEEEE TT S HHHHHHHTTT EEEEEE    SSS    B GGGGGGGGGSEEEEEE TT  BTT  ---GGGGTT TT SEEE TT   :    
ExpBur          :beebbbebebbebbebbbbeebeebbebbeebebeebebbbeeeeeeeebeeebbebbeebebeebbbeebebeeee---eebbebbeebeebebbbbeb:    

queryA       484:KALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFD-NASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQN: 582
                :  *           *   *       * * ***  * *        *    *    *    *     *  *  *  ****   *    *     *    *:
3rg1_A_1     290:NGL-----------PSGIEGMNSLKKLVLNANSFDQ-LCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLS---HSDIEASDCCNLQ-LKN: 373
SecStr          :S  ----------- S  STTTT  EEE TT   SB-GGGG GGG TT  EEE  S SS BB  SSTTTT TT  EEE T---TS B  SSBSTTT-TTT:    
ExpBur          :eeb-----------beebebbeebeebbbbebbbee-beebebebbeebebbbbeebeeebebbebbbbebbebeebbbb---ebebebeebbbeb-bee:    

queryA       583:FTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLK---FF: 679
                :   *  **** *    * *    *   *  *      *            * *  *  *  * **   *    *   *     *  *    *        :
3rg1_A_1     374:LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHV------KAPHSPFQNLHLLRVLNLS-HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSIS: 466
SecStr          : TT  EEE  S S EEB TTTTTTSTT  EEE TTS EE ------ TT  TTTT TT  EEE T-T    TT TTTTTT TT  EEE TT   GGGEE :    
ExpBur          :beebeebbbbebebbbbeeebbbebebbeebebbebebeb------eeeebbbebbeebeebebb-ebebebebeebbbbbeebbebbbeebebeebebe:    

queryA       680:NWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD: 779
                :   ***    ** * *    **               * ****         **    *  *   **    *    *        *   *  **  *** :
3rg1_A_1     467:KTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLL--PALSQQSIINLSHNPLDCTCS: 563
SecStr          :SS TTTTSTT SEEE TTS  SEE TTSSTT     EEE  SS   GGGGGGGTT  S -EEE  SS      GGGH--HHHHTSSEEE  SS EE SGG:    
ExpBur          :bebbbeebeebeebbbbebebeebeebbbeebeebeebbbbebebebebbebbeebeeb-ebbbbebebeebbeebb--ebeeebeebbbbebebbeeee:    

queryA       780:IGDFRRWMDEHLNVKIPRLVDVICASPGDQRG: 811
                :   *  *  * *  *        ** *   **:
3rg1_A_1     564:NIHFITWYKENLH-KLEDSEETTCANPPSLRG: 594
SecStr          :GHHHHHHHHHTGG-GBTTGGG BEEESGGGTT:    
ExpBur          :beebeebeeeeee-bebeeebbebeeeeebee:

Input Residue Numbers for Focused Sites

ex) 2,15,123