Protein Model on 3p72_A_1_C_1 (TEMPLATE: 3p72 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [269 aa] Platelet glycoprotein Ib alpha chain :GP1BA_HUMAN
2 b C 1 (A) non-polymer(CL) CHLORIDE ION 777T(N) 778C (identity: 50.0 %/35.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3p72_A_1 identity=35.4%
queryA       588:VLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQF: 687
                : * ** *  **           *  *      *  *  *           *  *  **** * *   *      *** ** *    * *       *   :
3p72_A_1      35:ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT---------LPVLGTLDLSHNQLQSLPLLGQ-TLPA-LTVLDVSFNRLTSLPLGALRGL: 123
SecStr          :EEE TTS  SEEEGGGGTT TT  EEE TTS   EEE  S --------- TT  EEE  SS  SS    TT-T TT-  EEE TTS      TTTTTT :    
ExpBur          :bbebbebebeebbbeebeebeebeebbbbebebeebeeeee---------beebbebebbebebeebbebbe-bbee-bebbebbebebeebeeebbeeb:    

queryA       688:PRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWM: 787
                :  *  * * ** *  *   *   *  *  * *  *    ** * *     *  * *  * * ** *          *    *****  * * *  **** :
3p72_A_1     124:GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL---LPFAFLHGNPWLCNCEILYFRRWL: 220
SecStr          :TT  EEE TTS  S   TTTTTT TT  EEE TTS      TTTTTT TT  EEE  SS      TTTTTTS --- SEEE  SS B  SGGGHHHHHHH:    
ExpBur          :eebeebebbebebeebbeebbeebeebeebbbbebebeebbeebbeebeebebbbbbebebeebeeebbeeee---beebbbbebebeeebebbebbebb:    
Contact         :                                                                                         bb         

queryA       788:DEH: 790
                :   :
3p72_A_1     221:QDN: 223
SecStr          :HHT:    
ExpBur          :eeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123