Protein Model on 3j0a_B_1_A_1 (TEMPLATE: 3j0a )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TLR8_HUMAN) B 1 (B) polymer(polypeptide(L)) [632 aa] Toll-like receptor 5 :TLR5_HUMAN
2 b A 1 (A) polymer(polypeptide(L)) [797 aa] Toll-like receptor 5 :TLR5_HUMAN 430I(W) 835T(L) 838I(V) 842V(T) (identity: 0.0 %/31.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3j0a_B_1 identity=31.4%
queryA       276:INIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLR: 375
                :  **  ** **  ** * * *          *    **  * * *  *            *  *  **** * *   *         * ** **      :
3j0a_B_1      62:LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-----LHPSFGKLNSLKSIDFS: 156
SecStr          : EE SSTTSS TT  EEE TT    B  TTSS S SS   EE TT   SS  STT   SS SS  EEEEES       -----  GGGGT SS  EEEEE:    
ExpBur          :eebeeebbeebeebebbbbbebebeeeeeebbebbeebeebebeebebeebebeeebbeebebbbebbbbebebebbe-----bbebbeebeebeebebb:    

queryA       376:GYVFQELREDDFQPLMQLPNLSTINLGINFIK---QIDF-KLFQNFSN--LEIIYLSENRISPLVKD-----TRQSYANSSSFQRHIRKRRSTDFEF---: 461
                :        *    ** *   **   *  *        *  *    * *  ***   * *                * * *     **       * *   :
3j0a_B_1     157:SNQIFLVCEHELEPL-QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI---MGAGFGFHNI: 252
SecStr          :SS      SGGGHHH-HH SS   EE  SBS         SSS TTTT  BSEEB SS  SSHHHHTTGGGTS S  BSEEE  S  --- B SSS SSS:    
ExpBur          :ebebeebeeebbeeb-eeeeeeebbbbbbbebebeebeeeeeebbbeebebeebebbbbeeebeebbebbebbbebebebbbebeeb---ebbbebebee:    
Contact         :                                                            b                                       

queryA       462:-DPHSN-FYHFTRPLIKPQCAAYG----------------KALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLD: 543
                : **  * *    *          *                * * *  * *  *    *  *     **** *      *   *   * * * **  *   :
3j0a_B_1     253:KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKVAYIDLQKNHIA: 351
SecStr          :TTTTTTTHHHHTTS   EEE TT    BB S  SSS     EEE  S     B TTTTTT SS  EEE  S   S   S- S SS TT  EEE  S    :    
ExpBur          :eeebeebbebbeebebeebbbbebebeebeeebbeebeebebbbbbebebeebeeebbeebeebeebebbebbeeeeee-bbbeebeebbebbbeebebe:    

queryA       544:FDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNR---LDILWNDDDNRYISIFKGLKN: 640
                :         *  *  ***  *            *  *          ** *   **  * **    *  *  * **   ****                 :
3j0a_B_1     352:IIQDQTFKFLEKLQTLDLRDNA-----------LTTIHFIPSIPDIFLSGNKLVTLP-KINL-TANLIHL--SENRLENLDILY---------FLLRVPH: 427
SecStr          :   SSSS S     EEEEET  -----------S   SS    SEEEEES       -   T-T  EEE -- S    SSHHHH---------HHTT TT:    
ExpBur          :ebeeebbbebeebebbbbeebb-----------ebbbeebbebeebebbebeebeeb-eeee-ebeebbb--eebebeeebbbe---------bbeebee:    

queryA       641:LTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKF-----FNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEV: 735
                :*  * *  **              **  *    ***         *        *  * *  * *  *          ** * *  **   *    *   :
3j0a_B_1     428:LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--: 525
SecStr          :  EEE SS       SSSSS S TT  EEE  S   SSS  S   SS SS B  EE     HHHHTT  TTSTTT  S  EEEEES   SS       --:    
ExpBur          :beebbbeebebeebbeeebbbebeebeebebbebebeebbeeebbebbeebbbbbebbebeeeebeebeeebbeebeebebbbbbebebeebebeeeb--:    

queryA       736:SSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPR-LVDVICASPGDQRGKSIVSLELTTCVSDVTAVILFFF: 834
                :  *  ** * * *   *           ** *    * * * *    *  *   * ** *     *  *  *    * *  **    *          * :
3j0a_B_1     526:ANLEILDISRNQLLAPNPDVF-----VSLSVLDITHNKFICECELSTFINWLN-HTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCXXXXXXXXXXFS: 619
SecStr          :S   EEEEEEE      S   -----SS  EEEEEEE    SSS  HHHHHHH-HTTGGG   GGG    S SSS S  TTT      ---------- H:    
ExpBur          :eebeebebbebebbbeeeeeb-----eebeebbbbebebbbeeeeeebeebbe-ebeeeeebeeeebebeebeeeeeeebeeeeeeee----------ee:    

queryA       835:TFFITTMVM: 843
                : *   *   :
3j0a_B_1     620:LFIVCTVTL: 628
SecStr          :HHHHHHHHH:    
ExpBur          :eeeeeeeee:    
Contact         :b  b   b                                                                                            


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