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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [797 aa] | Toll-like receptor 5 :TLR5_HUMAN | |
2 | b | I 1 (I) | branched(oligosaccharide) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | 790H 791L(T) 792N (identity: 66.7 %/30.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3j0a_A_1 identity=30.0% |
queryA 276:INIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLR: 375 : ** ** ** ** * * * * ** * * * * * * **** * * * * ** ** : 3j0a_A_1 62:LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-----LHPSFGKLNSLKSIDFS: 156 SecStr : EE TTTTSS TT EEE TT EE TTSS S SS EE TT SS STT SS SS EEEEES ----- GGGGT SS EEEEE: ExpBur :eebeeebbeebeebebbbbbebebeeeeeebbebbeebeebebeebebeebebeeebbeebebbbebbbbebebebbe-----bbebbeebeebeebebb: queryA 376:GYVFQELREDDFQPLMQLPNLSTINLGINFIK---QIDF-KLFQNFSN--LEIIYLSENRISPLVKD-----TRQSYANSSSFQRHIRKRRSTDFEF---: 461 : * ** * ** * * * * * * *** * * * * * ** * * : 3j0a_A_1 157:SNQIFLVCEHELEPL-QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI---MGAGFGFHNI: 252 SecStr :SS SGGGHHH-HH SS EE SBS SSS TTTT BSEEB SS SSTTTTSGGGGTS S BSEEE SS --- B SSS SSS: ExpBur :ebebeebeeebbeeb-eeeeeeebbbbbbbebebeebeeeeeebbbeebebeebebbebeeebeebbebbebbbebebebbbebeeb---ebbbebebee: queryA 462:-DPHSN-FYHFTRPLIKPQCAAYG----------------KALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLD: 543 : ** * * * * * * * * * * * * **** * * * * * * ** * : 3j0a_A_1 253:KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKVAYIDLQKNHIA: 351 SecStr :TTGGGTTTTTTTTS EEE TT EE S SSS EEEEES EE TTTTTT SS EEEEES S S- S SS TT EEE S : ExpBur :eeebeebbebbeebebeebbbbebebeebeeebbeebeebebbbbbebebeeebeebbeebeebeebebbebbeeeeee-bbbeebeebbebbbeebebe: queryA 544:FDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNR---LDILWNDDDNRYISIFKGLKN: 640 : * * *** * * * ** * ** * ** * * * ** **** : 3j0a_A_1 352:IIQDQTFKFLEKLQTLDLRDNA-----------LTTIHFIPSIPDIFLSGNKLVTLP-KINL-TANLIHL--SENRLENLDILY---------FLLRVPH: 427 SecStr : SS S S EEEEET -----------S SS S SEEEEES - T-T EEE -- S SSTTHH---------HHTT TT: ExpBur :ebeeebbbebeebebbbbeebb-----------ebbbeebeebeebebbebeeeeeb-eeee-ebeebbb--bebebeeebbbe---------bbeebee: queryA 641:LTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKF-----FNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEV: 735 :* * * ** ** * *** * * * * * * * ** * * ** * * : 3j0a_A_1 428:LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--: 525 SecStr : EEEEES SSSSS S TT B EEES SSS S SS SS B EE HHHHTT TTSSSS S SEEEEES SS --: ExpBur :beebbbeebebeebbeeebbbebeebeebebbebebeebbeeebbebbeebbbbbebbebeeeebeeeeeebeeebeebebbbbbebebeebebeeeb--: queryA 736:SSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPR-LVDVICASPGDQRGKSIVSLELTTCVSDVTAVILFFF: 834 : * ** * * * * ** * * * * * * * * ** * * * * * * ** * * : 3j0a_A_1 526:ANLEILDISRNQLLAPNPDVF-----VSLSVLDITHNKFICECELSTFINWLN-HTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCXXXXXXXXXXFS: 619 SecStr :S EEEEEEE S -----SS EEEEEEE SSS SHHHHHH-HTTTTT GGG SS SSS S TTT ---------- H: ExpBur :eebeebebbebebbbeeeeeb-----eebeebbbbebebbbeeeeeebbebbe-ebeeeebbeeeebebeebeeeeeeebeeeeeeee----------ee: Contact : bbb queryA 835:TFFITTMVMLAALAHHLFYWDVWFIYNVCLAKVKGYRSLSTSQTF------YDAYISYDTKDASVTDWVINELRYHLE-ESRDKNVL-LCLEERDWDPGL: 926 : * * * * * **** ** ** * * ** * * ** **** ** : 3j0a_A_1 620:LFIVCTVTLTLFLMTILTVTKFRXXXXXXXXXXXXXXXXDHPQGTEPDMYKYDAYLCFSSKDFT---WVQNALLKHLDTQYSDQNRFNLCFEERDFVPGE: 716 SecStr :HHHHHHHHHHHHHHTTTSHHHH ---------------- GGGSSS SEEEE STTHH---HHHHTHHHHHHSTTTTTT S EE SSSS SSS: ExpBur :eeeeeeeeeeeeeeeeeeeeeee----------------eeeeeebeeebebbbbbbbbeeeee---bbeebbbeebeeeeeeeeebebbbeeeeeeeee: queryA 927:AIIDNLMQSINQSKKTVFVLTKKYAKSWNFKTAFYLALQRLMDENMDVIIFILLEPVLQHS--QYLRLRQRICKSSILQWPDNPKAEGLFWQTLRNVVL:1023 : * * * * * * ** * * * * * * * ** * * * *: 3j0a_A_1 717:NRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFLHKLSQQIL: 815 SecStr : HHHHHHHHHHHSSEEEEEE TTHHHHTSTTHHHHHHHS SS TTEEEEESS SSS S SSTTHHHHTT SSSTTTTHHHHHHTTTTT: ExpBur :eeebbbeebbebbbbbbbbbbeebbeebbeebbeebeeeeebeeeeebbbbbbbeeeeeebeeeeebbeebeebeeebeebeeeeeeeebeeebeeebe: |