Protein Model on 3j0a_A_1_H_1 (TEMPLATE: 3j0a )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [797 aa] Toll-like receptor 5 :TLR5_HUMAN
2 b H 1 (H) branched(oligosaccharide) alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose 785R(N) 788D(N) 790H 814I(L) 815V(F) 816S 817L (identity: 42.9 %/30.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3j0a_A_1 identity=30.0%
queryA       276:INIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLR: 375
                :  **  ** **  ** * * *          *    **  * * *  *            *  *  **** * *   *         * ** **      :
3j0a_A_1      62:LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-----LHPSFGKLNSLKSIDFS: 156
SecStr          : EE TTTTSS TT  EEE TT    EE TTSS S SS   EE TT   SS  STT   SS SS  EEEEES       -----  GGGGT SS  EEEEE:    
ExpBur          :eebeeebbeebeebebbbbbebebeeeeeebbebbeebeebebeebebeebebeeebbeebebbbebbbbebebebbe-----bbebbeebeebeebebb:    

queryA       376:GYVFQELREDDFQPLMQLPNLSTINLGINFIK---QIDF-KLFQNFSN--LEIIYLSENRISPLVKD-----TRQSYANSSSFQRHIRKRRSTDFEF---: 461
                :        *    ** *   **   *  *        *  *    * *  ***   * *                * * *     **       * *   :
3j0a_A_1     157:SNQIFLVCEHELEPL-QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI---MGAGFGFHNI: 252
SecStr          :SS      SGGGHHH-HH SS   EE  SBS         SSS TTTT  BSEEB SS  SSTTTTSGGGGTS S  BSEEE  SS --- B SSS SSS:    
ExpBur          :ebebeebeeebbeeb-eeeeeeebbbbbbbebebeebeeeeeebbbeebebeebebbebeeebeebbebbebbbebebebbbebeeb---ebbbebebee:    

queryA       462:-DPHSN-FYHFTRPLIKPQCAAYG----------------KALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLD: 543
                : **  * *    *          *                * * *  * *  *    *  *     **** *      *   *   * * * **  *   :
3j0a_A_1     253:KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKVAYIDLQKNHIA: 351
SecStr          :TTGGGTTTTTTTTS   EEE TT    EE S  SSS     EEEEES    EE TTTTTT SS  EEEEES   S   S- S SS TT  EEE  S    :    
ExpBur          :eeebeebbebbeebebeebbbbebebeebeeebbeebeebebbbbbebebeeebeebbeebeebeebebbebbeeeeee-bbbeebeebbebbbeebebe:    

queryA       544:FDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNR---LDILWNDDDNRYISIFKGLKN: 640
                :         *  *  ***  *            *  *          ** *   **  * **    *  *  * **   ****                 :
3j0a_A_1     352:IIQDQTFKFLEKLQTLDLRDNA-----------LTTIHFIPSIPDIFLSGNKLVTLP-KINL-TANLIHL--SENRLENLDILY---------FLLRVPH: 427
SecStr          :   SS S S     EEEEET  -----------S   SS  S SEEEEES       -   T-T  EEE -- S    SSTTHH---------HHTT TT:    
ExpBur          :ebeeebbbebeebebbbbeebb-----------ebbbeebeebeebebbebeeeeeb-eeee-ebeebbb--bebebeeebbbe---------bbeebee:    

queryA       641:LTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKF-----FNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEV: 735
                :*  * *  **              **  *    ***         *        *  * *  * *  *          ** * *  **   *    *   :
3j0a_A_1     428:LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--: 525
SecStr          :  EEEEES       SSSSS S TT  B EEES   SSS  S   SS SS B  EE     HHHHTT  TTSSSS  S SEEEEES   SS       --:    
ExpBur          :beebbbeebebeebbeeebbbebeebeebebbebebeebbeeebbebbeebbbbbebbebeeeebeeeeeebeeebeebebbbbbebebeebebeeeb--:    

queryA       736:SSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPR-LVDVICASPGDQRGKSIVSLELTTCVSDVTAVILFFF: 834
                :  *  ** * * *   *           ** *    * * * *    *  *   * ** *     *  *  *    * *  **    *          * :
3j0a_A_1     526:ANLEILDISRNQLLAPNPDVF-----VSLSVLDITHNKFICECELSTFINWLN-HTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCXXXXXXXXXXFS: 619
SecStr          :S   EEEEEEE      S   -----SS  EEEEEEE    SSS  SHHHHHH-HTTTTT   GGG   SS SSS S  TTT      ---------- H:    
ExpBur          :eebeebebbebebbbeeeeeb-----eebeebbbbebebbbeeeeeebbebbe-ebeeeebbeeeebebeebeeeeeeebeeeeeeee----------ee:    
Contact         :                                                 b  b b                        bbbb                 

queryA       835:TFFITTMVMLAALAHHLFYWDVWFIYNVCLAKVKGYRSLSTSQTF------YDAYISYDTKDASVTDWVINELRYHLE-ESRDKNVL-LCLEERDWDPGL: 926
                : *   *      *   *                         *        ****     **     ** * *  **     * *   ** ****  ** :
3j0a_A_1     620:LFIVCTVTLTLFLMTILTVTKFRXXXXXXXXXXXXXXXXDHPQGTEPDMYKYDAYLCFSSKDFT---WVQNALLKHLDTQYSDQNRFNLCFEERDFVPGE: 716
SecStr          :HHHHHHHHHHHHHHTTTSHHHH ----------------   GGGSSS    SEEEE  STTHH---HHHHTHHHHHHSTTTTTT S EE SSSS  SSS:    
ExpBur          :eeeeeeeeeeeeeeeeeeeeeee----------------eeeeeebeeebebbbbbbbbeeeee---bbeebbbeebeeeeeeeeebebbbeeeeeeeee:    

queryA       927:AIIDNLMQSINQSKKTVFVLTKKYAKSWNFKTAFYLALQRLMDENMDVIIFILLEPVLQHS--QYLRLRQRICKSSILQWPDNPKAEGLFWQTLRNVVL:1023
                :  * *    *  * * *               **  *  *         *        *         *    *   * **      * *   *    *:
3j0a_A_1     717:NRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFLHKLSQQIL: 815
SecStr          : HHHHHHHHHHHSSEEEEEE TTHHHHTSTTHHHHHHHS    SS TTEEEEESS   SSS  S SSTTHHHHTT      SSSTTTTHHHHHHTTTTT:    
ExpBur          :eeebbbeebbebbbbbbbbbbeebbeebbeebbeebeeeeebeeeeebbbbbbbeeeeeebeeeeebbeebeebeeebeebeeeeeeeebeeebeeebe:

Input Residue Numbers for Focused Sites

ex) 2,15,123