Protein Model on 3fxi_A_1_D_1 (TEMPLATE: 3fxi )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [601 aa] Toll-like receptor 4 :TLR4_HUMAN
2 b D 1 (D) polymer(polypeptide(L)) [140 aa] Lymphocyte antigen 96 :LY96_HUMAN 600T(S) 601D(S) 602K(N) 605L 624W(S) 625N(E) 632I(F) 636K(L) 637G(S) 654I(A) 655P(F) 656N 657E(G) 660L(N) (identity: 14.3 %/31.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3fxi_A_1 identity=31.3%
queryA       216:VPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHL-K: 314
                : *  ** *   * **           *     *  ****    **                 *   * * *  *  * *            *     * *:
3fxi_A_1      22:IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS----RC-------------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK: 104
SecStr          :   SS SS  EEE  S     B TT   S TT  EEE T----T -------------   EE TTSSTT SS  EEE TT    EE TTTTTT TT  E:    
ExpBur          :ebeebeeebeebbbbebbbeebbeebbebbeebeebebb----eb-------------ebeebeebbbeebeebebbbbebbebeeebebbbeebeebee:    

queryA       315:VLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLG----INFIKQID: 410
                :    * *    *         *  *  *    * *     *       ** *  *  * *     *     *   * * * *           ***    :
3fxi_A_1     105:LVAVETNLASLENFP---IGHLKTLKELNVAHNLI-----QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA: 196
SecStr          :EE TTS    STT T---TTT TT  EEE  SS  -----      GGGTT TT  EEE  SS   EE GGGGTTGGG SS   EEE TT    EE TTT:    
ExpBur          :bbbbebebeebeebb---bbebeebeebebbebeb-----eebebbebbeebeebeebebbebebebbeeebbebbeebeebebbbebbebebeebeeeb:    

queryA       411:FK--------LFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQC--------AAYGKALDLSLNSIF: 494
                :**        *  **  *              *   *  *            *    **    *   *        *         **   **  *  * :
3fxi_A_1     197:FKEIRLHKLTLRNNFDSLNVM-----------KTCIQGLAG-------LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY---LDYYLDDII: 275
SecStr          :TTT EEEEEEEES  SSHHHH-----------HHHHHHTTT------- EEEEEEEE  TTS   S   TTTTGGGGGSEEEEEEEEE---ESS    ST:    
ExpBur          :beebebeebbbebbbeebeeb-----------eebbebbee-------bebebbbbbbeeeeeebeebeebbbeebeebebeebebbb---beeebeebb:    

queryA       495:FIGPNQFENLPDIACLNLSANSNAQV-------------LSGTEFSAIPHVKYLDLTNNRLDF-----DNASALTELSDLEVLDLSYNSHYFRIAGVTHH: 576
                :      *  *       *       *             *    *   *  *   *   ** *      **     *  ** **** *   *   *    :
3fxi_A_1     276:----DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL--KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK--GCCSQ: 367
SecStr          :----TTSGGGSS SEEEEEEEB TT          SEEEEES B SS      SS -- EEEEES BS SB      TT  EEE  SS  BEE--EEEEH:    
ExpBur          :----ebbebbbebbbbbbbebbbeebeebeeebebeebbbbebebeebbebebeeb--eebbbbebeeeeebeebebeebebbbbbebebebe--ebbbe:    

queryA       577:LEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNML: 676
                :  *    * ** * ** *   *      *    *  * *    *            * *  * **  ** *        *  *  *  **  *    *  :
3fxi_A_1     368:SDF--GTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSE------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSF: 457
SecStr          :HHH--T S   EEE  S SEEEEEEEE-ET TT  EEE TTSEEESTBT------TBTTTT TT  EEE TTS   B  TTTTTT -SS    B TT  B:    
ExpBur          :ebb--ebeebeebbbbebeebebeeeb-ebbeebeebbbeebebeebee------ebbbeebeebeebbbbebebebeeebbbebb-eebebbebbebbb:    
Contact         :                       bbb  b                  bb      b   bb                bbbb  b                

queryA       677:KF-FNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFE: 775
                :   *          *  ***    *  *        ***  *  ***    *         **  ** * *   *  *  *       *  * *  * * :
3fxi_A_1     458:QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQNDFA: 556
SecStr          :GGG   S  TT  S    B TTS   S  TTSGGG SS    B TTS  SS   SGGGG TT       SS     S   TT-   TT       S    :    
ExpBur          :eeeebbebbeebeebeebbbbebebeebbeebbebbeebeebbbbebebebbebebbeebeebeebbbbebebbebeeeebe-ebbeebeebbbbebebb:    

queryA       776:CTCDIGDFRRWMDE--HLNVKIPRLVDVICASPGDQRGKSIVSLELT: 820
                :***    *  *      * *   *     ** * *  *    **  *:
3fxi_A_1     557:CTCEHQSFLQWIKDQRQLLVEVERME---CATPSDKQGMPVLSLNIT: 600
SecStr          : SGGGHHHHHHHHHTTTT   GGG B---  S SSS SSBTTS    :    
ExpBur          :beeeeeebbebbbeeeeebeeeeebe---beebeeeeeeebbebeee:

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