Protein Model on 3ciy_D_1_A_1 (TEMPLATE: 3ciy )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) D 1 (B) polymer(polypeptide(L)) [668 aa] Toll-like receptor 3 :TLR3_MOUSE
2 b A 1 (C) polymer(polyribonucleotide) 46-MER 376G(R) 403I(N) 405F(N) 427E(H) 428N 429R(N) 431S(A) (identity: 14.3 %/35.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3ciy_D_1 identity=35.1%
queryA        65:VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSN-------------GLNITDGAFLNLKNLRELLLEDNQLPQIPSGLPESLTEL: 151
                : *****  * *  *    *    ** *  * **       *  * *                *      **    ** * *  * *     *       *:
3ciy_D_1      99:LTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGT-GVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKL: 197
SecStr          :  EEEE S       S TTSS SS  EEEE SS  S     S-S   SS  EEE  SS   EE TTTSTT SS   SEEE  S    EE TTSSTTSS  :    
ExpBur          :beebbbeebebeeeeeebbeebeebeebbbbebebeebebbe-eebbeebeebebbebebebbeeebbebbeebebeebbbbebebeebbebbbebbeeb:    

queryA       152:-SLIQNNIY---NITKEGISRLIN--LKNLYLAWNCYFNKVCEKTNIEDGVFETL--TNLELLSLSFNSLSHVP----PKLPSSLRKLFLSNTQIKYISE: 239
                :  *  **       *      * *    ** ** *                *  *  ***  * ** * *  *       ** *** * *    *   * :
3ciy_D_1     198:FALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN-------QLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLP-SLRYLSLEYNNIQRLSP: 289
SecStr          : EEE  SS   HHHHHHHHHHTTTS   EEE  SS-------   EE TTGGGGGGGS   EEE  SS   EE TTTTTT T-T  EEE  S  B EE G:    
ExpBur          :ebbbbeebebeeeebbebbebbbebebeebbbbeb-------ebeebeeebbbbbeebebbebbbbebebeebeebbbebbe-ebeebbbeebebeebee:    

queryA       240:EDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYL----------------: 323
                :  * ** **  * *     * *               *** * ** *  * ***             *     ** * *                     :
3ciy_D_1     290:RSFYGLSNLRYLSLK----RAFTKQSVSL----ASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHS: 381
SecStr          :GGGTT SS  EEE T----T B    SSS----    EE SSSSTT TT  EEE  S       TTTTTT SS  EEE TT  SS  EE TTTTTGGGGS:    
ExpBur          :ebbebbeebeebbbe----bbbbeeeeee----eeebebbeebbeebeebeebbbbebbbeebeeebbeebeebeebbbbebbeebeebeeebbebbeeb:    

queryA       324:-----------VGEIASGAFLTMLPRLEILDLSFNYIKG------------------SYPQHINIS-RNFSKLLSLRALHLRGYVFQ--ELREDDFQPLM: 391
                :              ** * *   *  * ****  * *                    **      *   *    **  * **             * ** :
3ciy_D_1     382:PLLTLNLTKNHISKIANGTF-SWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLR: 480
SecStr          :   EEE  SS   EE TTTT-TT TT  EEE  SS  EEEE SGGGTT TT  EEE  S SEEEE TTTTTT TT SEEE TTS EE  SSSS TTTT  :    
ExpBur          :ebeebebbebebeebeebbb-eebbebeebbbbebebebebebebbeebeebeebebbebeebbbeeebbeebeebeebbbeebebeebeeeebbbeebe:    
Contact         :                                                                                  b                 

queryA       392:QLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISPL: 433
                :   **    *  * *  *   *     ****     *    *:
3ciy_D_1     481:---NLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARL: 519
SecStr          :---S  EEE  SS      TTTTTT TT  EEE  S    TT:    
ExpBur          :---ebbebbbbebebeebeeebbeebeebeebbbbebebbeb:    
Contact         :           b b                     bbb b

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