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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [663 aa] | Toll-like receptor 3 :TLR3_MOUSE | |
2 | b | D 1 (D) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 216V 238S 240E(R) (identity: 66.7 %/36.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3cig_A_1 identity=36.3% |
queryA 65:VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSN-------------GLNITDGAFLNLKNLRELLLEDNQLPQIPSGLPESLTEL: 151 : ***** * * * * ** * * ** * * * * ** ** * * * * * *: 3cig_A_1 99:LTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGT-GVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKL: 197 SecStr : EEE TTS S TTTT TT EEE SS S-SS TT EEE SS EE SGGGGGGTT EESEEE S EE TTTTTTSSEE: ExpBur :beebbbebbebeeeeebbbeebeebeebbbbebbbeebebbe-eebbeebeebbbbebebebbeeebbebbeebebeebbbbebebeebbeebbeebeeb: queryA 152:-SLIQNNIY---NITKEGISRLIN--LKNLYLAWNCYFNKVCEKTNIEDGVFETL--TNLELLSLSFNSLSHVP----PKLPSSLRKLFLSNTQIKYISE: 239 : * ** * * * ** ** * * * *** * ** * * * ** *** * * * * : 3cig_A_1 198:FALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN-------QLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLP-SLRYLSLEYNNIQRLSP: 289 SecStr : EEE TTS HHHHHHHHHHHSSS EEE SS------- EE TTTTGGGTTS EEE SS EE TTTTTT T-T EEE S B EE T: ExpBur :bbbebeebebeeebbbebbebbbebebeebbbbeb-------ebeebeeebbbbbeebebbebebbebebeebeebbbbebe-ebeebbbeebebeebee: Contact : b b b queryA 240:EDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSS--------------------------TSLRKINAAWFKNMPH-: 312 : * ** ** * * * * *** * ** * * *** *** * * : 3cig_A_1 290:RSFYGLSNLRYLSLK----RAFTKQSVSL----ASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHS: 381 SecStr :TTTTT TT EEE T----T B SSS---- EE TTTTTT S EEE S B TTSSTT TT EEE TT BSS EE TTTTGGGTTS: ExpBur :ebbebbeebbebbbe----ebbbeeeeee----eeebebeeebbeebeebeebbbbebebeebeeebbeebeebeebbbbebbeebeebeeebbebbeeb: Contact :b queryA 313:-LKVLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKG------------------SYPQHINIS-RNFSKLLSLRALHLRGYVFQ--ELREDDFQPL: 390 : * * * * ** * * * * **** * * ** * * ** * ** * **: 3cig_A_1 382:PLLTLNLTKNH-ISKIANGTF-SWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPL: 479 SecStr : EEE SS - EE TTTT-TT TT EEE SS EEE STTSTT SS EEE S SEEE TTTTTT TT EEE TT EES S SS TTTT : ExpBur :ebeebebbebe-beebeebbb-eebbebeebbbbebebebebebebbeebeebbebebbebeebebeeebbeebeebeebbbeebebeebebeebbbeeb: queryA 391:MQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISPL: 433 : ** * * * * * **** * *: 3cig_A_1 480:R---NLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARL: 519 SecStr :T---T EEE S S TTTTTT TT EEE SS TTT : ExpBur :e---ebbbbbbbebebeebeebbbeebeebeebbbbebebbee: |