Protein Model on 3cig_A_1_B_1 (TEMPLATE: 3cig )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [663 aa] Toll-like receptor 3 :TLR3_MOUSE
2 b B 1 (B) branched(oligosaccharide) 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 128R 152S(A) 174N 205L(Q) 226K(Y) (identity: 40.0 %/36.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3cig_A_1 identity=36.3%
queryA        65:VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSN-------------GLNITDGAFLNLKNLRELLLEDNQLPQIPSGLPESLTEL: 151
                : *****  * *  *    *    ** *  * **       *  * *                *      **    ** * *  * *     *       *:
3cig_A_1      99:LTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGT-GVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKL: 197
SecStr          :  EEE TTS      S TTTT TT  EEE  SS        S-SS  TT  EEE  SS   EE SGGGGGGTT EESEEE  S    EE TTTTTTSSEE:    
ExpBur          :beebbbebbebeeeeebbbeebeebeebbbbebbbeebebbe-eebbeebeebbbbebebebbeeebbebbeebebeebbbbebebeebbeebbeebeeb:    
Contact         :                                                                            b                       

queryA       152:-SLIQNNIY---NITKEGISRLIN--LKNLYLAWNCYFNKVCEKTNIEDGVFETL--TNLELLSLSFNSLSHVP----PKLPSSLRKLFLSNTQIKYISE: 239
                :  *  **       *      * *    ** ** *                *  *  ***  * ** * *  *       ** *** * *    *   * :
3cig_A_1     198:FALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN-------QLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLP-SLRYLSLEYNNIQRLSP: 289
SecStr          : EEE TTS   HHHHHHHHHHHSSS   EEE  SS-------   EE TTTTGGGTTS   EEE  SS   EE TTTTTT T-T  EEE  S  B EE T:    
ExpBur          :bbbebeebebeeebbbebbebbbebebeebbbbeb-------ebeebeeebbbbbeebebbebebbebebeebeebbbbebe-ebeebbbeebebeebee:    
Contact         : b                          b                                b                        b             

queryA       240:EDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSS--------------------------TSLRKINAAWFKNMPH-: 312
                :  * ** **  * *     * *               *** * ** *  * ***                             ***       *    * :
3cig_A_1     290:RSFYGLSNLRYLSLK----RAFTKQSVSL----ASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHS: 381
SecStr          :TTTTT TT  EEE T----T B    SSS----    EE TTTTTT  S  EEE  S  B    TTSSTT TT  EEE TT BSS  EE TTTTGGGTTS:    
ExpBur          :ebbebbeebbebbbe----ebbbeeeeee----eeebebeeebbeebeebeebbbbebebeebeeebbeebeebeebbbbebbeebeebeeebbebbeeb:    

queryA       313:-LKVLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKG------------------SYPQHINIS-RNFSKLLSLRALHLRGYVFQ--ELREDDFQPL: 390
                : *  * *  *     ** * *   *  * ****  * *                    **      *   *    **  * **             * **:
3cig_A_1     382:PLLTLNLTKNH-ISKIANGTF-SWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPL: 479
SecStr          :   EEE  SS -  EE TTTT-TT TT  EEE  SS  EEE  STTSTT SS  EEE  S SEEE  TTTTTT TT  EEE TT  EES S SS TTTT :    
ExpBur          :ebeebebbebe-beebeebbb-eebbebeebbbbebebebebebebbeebeebbebebbebeebebeeebbeebeebeebbbeebebeebebeebbbeeb:    

queryA       391:MQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISPL: 433
                :    **    *  * *  *   *     ****     *    *:
3cig_A_1     480:R---NLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARL: 519
SecStr          :T---T  EEE  S   S   TTTTTT TT  EEE  SS TTT :    
ExpBur          :e---ebbbbbbbebebeebeebbbeebeebeebbbbebebbee:

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