Protein Model on 3b2d_B_1_G_1
(TEMPLATE: 
3b2d
)Protein Model on 3b2d_B_1_G_1
(TEMPLATE: 3b2d
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [601 aa] | CD180 antigen :CD180_HUMAN | |
| 2 | b | G 1 (G) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 536D(R) 537L(G) 562S 563Y(H) 590N 592S 593H 612E(L) 614V(D) (identity: 44.4 %/29.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3b2d_B_1 identity=29.9% |
queryA 187:CEKTNIEDGVFETLTNL-ELLSLSFNSLSHVPPKLPSSLRKLF---LSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFA: 282
:** ** * * * *** * * * * * ** * * * * * * ** * * * * * :
3b2d_B_1 16:CENLGLSE-IPDTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGN-PLIFMAE---------TSLNGPK--: 102
SecStr : TT SS- TTS TT EEE TTS SEE TTTSTT TT EEE TTS EE TTTTTT TT EEE TT - EE T---------TTT T--:
ExpBur :beeeebee-bbeebeeebeebbbbebebeebeeeebeebeebbebbbbebebeebeeebbeebeebebbbbebb-ebeebbe---------ebbeebe--:
queryA 283:FQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAFLTMLP--RLEILDLSFNYIK-------GSYPQHINISRNFSKLLSLRALH: 373
: * * * * * * * * * * * * * * ** * * * * ** * ** :
3b2d_B_1 103:-----SLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNH----ISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGN-NVKGIE: 192
SecStr :-----T EEE TTS GGGS TT TT EEE TTSS---- TT TT EEE TTS EE HHHHHTTTT SSEEEE TT - EE :
ExpBur :-----ebeebebeebebeebeebbbebbeebebbebbebe----beebebbeebbbeebeebbbeebebeebbeebbebbeebeebebbbbeb-ebebbe:
queryA 374:LRGY---VFQELREDDFQPLMQLPNLSTINLGI--NFIKQIDFKLFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRH-IRKRRSTDFEFDPHSNF: 467
:* ** * **** * * * * * * * * * ** * :
3b2d_B_1 193:LGAFDSTIFQSLN------FGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDD-------EDISSAMLKGLCEMSVESLNLQEHRFSDISSTTF--------: 271
SecStr :TTTTTT EEEEEE------ TT S HHHHHHHTTT EEEEEE TTS ------- B GGGGGGGGGSEEEEEE TT BSS TTTT--------:
ExpBur :ebbbeebebeebb------bbbbeebebbbebbeebebeebebbbeeeeeb-------eebeeebbebbeebebebbbbeebebeeeeeebb--------:
queryA 468:YHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV--LSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNS: 565
: ** *** * * * ** * * * * * * * * * * **** * :
3b2d_B_1 272:----------QCFTQLQELDLTATHLKGL-PSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHL-YIRGNVKKLHL-GVGCLEKLGNLQTLDLSHND: 358
SecStr :----------TT TT SEEE TT S - SS TT TT EEE TT SBGGGG GGG TT SEE-E S SS B - SSTTTT TT EEE TTS :
ExpBur :----------ebbeebeebebbbbebeeb-eeebebbeebeebbbbebebeebeebebebbeebbbb-ebeebeeebeb-eebbbeebeebebbbbbebe:
Contact : bb bb
queryA 566:HYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPA-: 664
: * * * ****** * * * * ** * * * * * * * * * ** :
3b2d_B_1 359:----IEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHI------NAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVL: 448
SecStr :---- EEEESTTTSTT TT EEE S S EEE TTTTTT TT EEE TT EEE------ TT TTTT TT EEE TT TT TTTTTT TT :
ExpBur :----bebeebbbebbeebeebeebbbbebeebbbeeebbeebeebeebebbebebeb------eeeebbbeebeebebbebbebebebebeebbbebeeb:
Contact : b bb b b
queryA 665:---SLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTT: 761
: * * * * *** ** * * ** **** ** * * * * * :
3b2d_B_1 449:RHLNLKGNHFQDGTITKTN--LLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLL--PIL: 543
SecStr : EEE TT GGGEE SS --GGGG TT EEE TTS SEE TTTTTT TT EEE SS GGGGGGGTT S -EEE SS GGGH--HHH:
ExpBur :eebbbebbebeebbbeeeb--bbeebeebebbbbbebebeebeeebbeebeebeebbbbebebebebbbbbeebeeb-bbbbbebebeebeeebb--ebb:
queryA 762:TKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELT: 820
: * * ** *** * * * * * ** * ** * :
3b2d_B_1 544:SQQSTINLSHNPLDCTCSNIHFLTWYKENLH-KLEGSEETTCANPPSLRGVKLSDVKLS: 601
SecStr :HTSSEEE TT EE SGGGHHHHHHHHHTTT-SEESGGG BEEESGGGTT BTTT :
ExpBur :eebeebbbbebebbbeeebeebbebbeebee-bbeeeeebebeeeeeeeeeebeebeee:
|
[assembly_id:1]
[help]