Protein Model on 3b2d_A_1_C_1
(TEMPLATE: 
3b2d
)Protein Model on 3b2d_A_1_C_1
(TEMPLATE: 3b2d
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [601 aa] | CD180 antigen :CD180_HUMAN | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [139 aa] | Lymphocyte antigen 86 :LY86_HUMAN | 188E 189K(N) 209S 210F 230S(T) 231N(R) 254S(T) 255G 293N(F) 295S(I) 296S(Q) 317D(Y) 320F(S) 345S(Q) 346F(N) 410D(W) 414F 415Q(E) 416N(D) 448Q 489S(T) (identity: 28.6 %/29.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3b2d_A_1 identity=29.9% |
queryA 187:CEKTNIEDGVFETLTNL-ELLSLSFNSLSHVPPKLPSSLRKLF---LSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFA: 282
:** ** * * * *** * * * * * ** * * * * * * ** * * * * * :
3b2d_A_1 16:CENLGLSE-IPDTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGN-PLIFMAE---------TSLNGPK--: 102
SecStr : TTS SS- TTS TT EEE TTS SEE TTTTTT TT SEEE TTS EE TTTTTT TT EEE TT - EE T---------TTT T--:
ExpBur :beeeebee-bbeebeeebeebebbebebeebeeebbeebeebbebbbbebebeebeeebbeebeebbbbbbebb-ebeebbe---------ebbeebe--:
Contact : bb bb b bb bb
queryA 283:FQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAFLTMLP--RLEILDLSFNYIK-------GSYPQHINISRNFSKLLSLRALH: 373
: * * * * * * * * * * * * * * ** * * * * ** * ** :
3b2d_A_1 103:-----SLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNH----ISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGN-NVKGIE: 192
SecStr :-----T EEE TTS GGGS TT TT EEE TTSS---- TT TT EEE TT EE HHHHHTTTT SSEEEE TT - EE :
ExpBur :-----ebeebebeebebeebeebbbebbeebebbebbebe----beebebbeebbbeebeebbbeebebeebbeebbebbeebeebebbbbeb-ebeebe:
Contact : b bb b b bb
queryA 374:LRGY---VFQELREDDFQPLMQLPNLSTINLGI--NFIKQIDFKLFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRH-IRKRRSTDFEFDPHSNF: 467
:* ** * **** * * * * * * * * * ** * :
3b2d_A_1 193:LGAFDSTIFQSLN------FGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDD-------EDISSAMLKGLCEMSVESLNLQEHRFSDISSTTF--------: 271
SecStr :TTTTTT EEEEEE------ TT S HHHHHHHTTT EEEEEE TTS ------- B TTTTGGGGGSEEEEEE TT BSS TTTT--------:
ExpBur :ebbbeeeebeebe------bbbbeebebbbebbeebebeebebbbeeeeee-------eebeeebbebbeebebeebbbebbebeeeeeebb--------:
Contact : b bbb b
queryA 468:YHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV--LSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNS: 565
: ** *** * * * ** * * * * * * * * * * **** * :
3b2d_A_1 272:----------QCFTQLQELDLTATHLKGL-PSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHL-YIRGNVKKLHL-GVGCLEKLGNLQTLDLSHND: 358
SecStr :----------SGGGG SEEE TT S - SS SS TT EEE S SBGGGG GGG TT EE-E S SS B - SSTTTT TT EEE TTS :
ExpBur :----------ebbeebeebebbbbebeeb-eeebebbeebeebbbbebebeebeebbbebbeebbbb-ebeebeeebeb-eebbbeebeebebbbbbebe:
Contact : b
queryA 566:HYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPA-: 664
: * * * ****** * * * * ** * * * * * * * * * ** :
3b2d_A_1 359:----IEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHI------NAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVL: 448
SecStr :---- EEEESTTTSTT TT EEE S S EEE TTTTTT TT EEE TT EE ------ TT TTTT TT EEE TT TT TTTTTT TT :
ExpBur :----bebeebbeebbeebeebeebbbbebeebbbeeebbeebeebeebbbbebebeb------eeeebbbeebeebebbebbebebebebeebbbebeeb:
queryA 665:---SLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTT: 761
: * * * * *** ** * * ** **** ** * * * * * :
3b2d_A_1 449:RHLNLKGNHFQDGTITKTN--LLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLL--PIL: 543
SecStr : EEE TT GGGEE SS --GGGG TT EEE TTS EE TTTTTT TT EEE SS GGGGGGGTT S -EEE SS TTSH--HHH:
ExpBur :eebbbebbebeebebeeeb--bbeebebbebbbbbebebeebeeebbeebeebeebbbbebebebebbbbbeebeeb-bbbbbebebeebeeebb--ebb:
queryA 762:TKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELT: 820
: * * ** *** * * * * * ** * ** * :
3b2d_A_1 544:SQQSTINLSHNPLDCTCSNIHFLTWYKENLH-KLEGSEETTCANPPSLRGVKLSDVKLS: 601
SecStr :HTSSEEE TT EE SGGGHHHHHHHHH TT-SEETSTT EEESSSSTT TTT :
ExpBur :eebeebbbbebebbbeeebeebbebbeebee-ebeebeebebeeeeeeeeeebeebeee:
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[assembly_id:1]
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