Protein Model on 3a79_A_1_K_1 (TEMPLATE: 3a79 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [550 aa] Toll-like receptor 2, Variable lymphocyte receptor B :TLR2_MOUSE:Q4G1L2_EPTBU
2 b K 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 608K(P) 609S 639K 640N (identity: 75.0 %/29.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3a79_A_1 identity=29.0%
queryA       212:SLSHVPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASIN-IDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNM: 310
                :*    *  *      * **   * **   *     **  * *                      ** *   **  *  *  * **   *      **   :
3a79_A_1      42:SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS------------------SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL: 123
SecStr          :  SSS S   TT SEEE  SS   EE SSTTSS TT SEEE TT------------------S   EE TTTTTT TT  EEE  SS   S  TTSSTT :    
ExpBur          :ebeebbeebeeebebbbbbebebeebbeeebeebeebebbebee------------------bebeebeeebbeebeebeebbbbebebeebeeebbeeb:    

queryA       311:PHLKVLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGY-VFQELREDDFQPLMQLPNLSTINLGINFIKQI: 409
                :  ** *                                  *   *       *  *  *  *       * * *  **  *  *  *    *        :
3a79_A_1     124:SSLKYLN-------------------------------LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ: 192
SecStr          :TT  EEE------------------------------- TT   SSS SS SSTT TT  EEEEEESSS  EE SSTTTT  EEEEEEEEETT  EE TT:    
ExpBur          :eebebbb-------------------------------bbebebebbeeeebbeebeebebbbbbbeeebbebbeebbeebeebeebbbebbebeebeee:    

queryA       410:DFKLFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRS--TDFEFDPHSNFYHFTRPLIKPQCAAYGKAL-DLSLNS-------IFFIGPN: 499
                :  *       *    ***              *   *  *    *      * * *         *  *   *  *  * * * *        *      :
3a79_A_1     193:SLKSIRDIHHL-TLHLSESAF------LLEIFADILSSVRYLELRDTNLARFQFSPLP-VDEVSSPMKK--LAFRGSVLTDESFNELLKLLRYILELSEV: 282
SecStr          :TTTS  EEEEE-EEE SBGGG------HHHHHHHTTTTBSEEEEES B TT      S-         E--EEESS EEEHHHHHHHGGGGGT TT  EE:    
ExpBur          :bbeebebbebb-bbbbeeeeb------bbebbbbbbebbebbbbeebebeebebeebe-eeeeebebee--bbbbebebebebebbbbebbeebeebeeb:    

queryA       500:QFEN--LPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNI-: 596
                : *    *      * *       *   *   *     *      *  *       *          **  *          * *    *  * ** *   :
3a79_A_1     283:EFDDCTLNGLGDFNPSESDVVSELGKVETVTI---RRLHIPQFYLFYDLSTVYSLLEKVKRITVE-NSKVFLVP-----CSFSQHLKSLEFLDLSENLMV: 373
SecStr          :EE S EEES S     HHHHHHTTTT  EEEE---ES B TTGGG    GGGTTTTSS  EEEEE-SS      -----HHHHHH TT  EEE TTS   :    
ExpBur          :bebebebeebbebebeeebbeeebeebebbbb---eebebeeeeeeeeeeebbebbeebeebbbb-ebebeebb-----bebbeebeebebbbbbebebb:    

queryA       597:--YTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLD: 694
                :  *           **  ** * * *             *   ***** ** * *     *       *     *               *    ** **:
3a79_A_1     374:EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE-----ILLTLKNLTSLDISRNTFHPMPDSC--QWPEKMRFLNLSSTGIRVVKTCIPQT---LEVLD: 463
SecStr          :HHHHHHHT TTS TT  EEE TTS    HHHHHH-----HGGG TT  EEE  S       S  --   TT  EEE TT       TTS TT--- SEEE:    
ExpBur          :beebeebbbeebbeebeebbbbebebeebeebbe-----bbeebeebbbbbbbebebeebeeeb--ebbeebeebbbbebebeebeebbbee---bebbb:    
Contact         :             bb                             bb                                                      

queryA       695:LRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDF-RRWMDEH: 790
                :   * *    ** * *   *  *  * *    **   *  *  *      ** **          *   *    ** **  * *   *   **    :
3a79_A_1     464:VSNNNL----DSFSLFLPRLQELYISRNKLKTLPDASLFPV--LLVMKIASNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRIDYLSRWLNKN: 552
SecStr          :  SS  ----S      TT  EEE  SS  SS   TTS TT--  EEE  SS  S   SS TTS TT--  EEE  S      TTT HHHHHHHHHT:    
ExpBur          :bbebeb----eebebebeebeebebbebebeebbebebbee--bebbebbebebeebeeebbeebee--beebbbeebebeeeeeebebbbebbeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123