Protein Model on 2z81_A_1_E_1 (TEMPLATE: 2z81 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [549 aa] Toll-like receptor 2, Variable lymphocyte receptor B :TLR2_MOUSE:Q4G1L2_EPTBU
2 b E 1 (A) non-polymer(PCJ) (2R)-3-{[(2S)-3-HYDROXY-2-(PALMITOYLAMINO)PROPYL]THIO}PROPANE-1,2-DIYL DIHEXADECANOATE 486L 490L(F) 499N(V) 501F 504L 521L 527S(V) 529I 535L 540N(F) 553L 561L(V) 565S 566H(K) 567Y(V) 568F 569R(L) 570I(V) 571A(P) 579F (identity: 50.0 %/29.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2z81_A_1 identity=29.0%
queryA       212:SLSHVPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASIN-IDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNM: 310
                :*    *  *      * **   * **   *     **  * *                      ** *   **  *  *  * **   *      **   :
2z81_A_1      16:SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS------------------SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL:  97
SecStr          :  SS  S   TT  EEE  SS   EE SSTTSS TT  EEE TT------------------S   EE TTTTTT TT  EEE TTS   S  HHHHTT :    
ExpBur          :ebeebbeebeeebebbbbbebebeebbeeebeebeebeebebee------------------bebeebeeebbeebeebeebbbbebebeebeeebbeeb:    

queryA       311:PHLKVLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGY-VFQELREDDFQPLMQLPNLSTINLGINFIKQI: 409
                :  ** *                                  *   *       *  *  *  *       * * *  **  *  *  *    *        :
2z81_A_1      98:SSLKYLN-------------------------------LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ: 166
SecStr          :TT  EEE------------------------------- TT   SSS SS S TT TT  EEEEEESSS  EE TTTTTT  EEEEEEEEETT  EE TT:    
ExpBur          :eebeebb-------------------------------bbebebeebeeeebbeebeebebbbbbbeeebbebeeebbeebeebeebbbebbebeebeee:    

queryA       410:DFKLFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRS--TDFEFDPHSNFYHFTRPLIKPQCAAYGKAL-DLSLNS-------IFFIGPN: 499
                :  *       *    ***              *   *  *    *      * * *         *  *   *  *  * * * *        *      :
2z81_A_1     167:SLKSIRDIHHL-TLHLSESAF------LLEIFADILSSVRYLELRDTNLARFQFSPLP-VDEVSSPMKK--LAFRGSVLTDESFNELLKLLRYILELSEV: 256
SecStr          :TTTT SEEEEE-EEE SBSTT------HHHHHHHSTTTBSEEEEES B TT      S-S        E--EEEES EEEHHHHHHHHGGGGG TT  EE:    
ExpBur          :bbeebeebebb-bbbbeebeb------beebbbbbbebbebbbbeebebeebebeebe-eeeeebebee--bbbbebebbbebebbbbbbbeebeebeeb:    
Contact         :                                                                              b    b   b           b

queryA       500:QFEN--LPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNI-: 596
                : *    *      * *       *   *   *     *      *  *       *          **  *          * *    *  * ** *   :
2z81_A_1     257:EFDDCTLNGLGDFNPSESDVVSELGKVETVTI---RRLHIPQFYLFYDLSTVYSLLEKVKRITVE-NSKVFLVP-----CSFSQHLKSLEFLDLSENLMV: 347
SecStr          :EEES EEE  S     TTT     TT  EEEE---ES B S GGGS    HHHHHSTT  EEEEE-SS      -----HHHHHH TT  EEE  SS   :    
ExpBur          :bbbebebebeeebebeeeebbeebeebebbbb---eeeeeeeeeebeeeebebebbeebeebbbb-ebebeebe-----bebbeebeebebbbbbebebe:    
Contact         : b    b                b     b b     b    b            b       b   bbbbbbb       b                  

queryA       597:--YTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLD: 694
                :  *           **  ** * * *             *   ***** ** * *     *       *     *               *    ** **:
2z81_A_1     348:EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE-----ILLTLKNLTSLDISRNTFHPMPDSC--QWPEKMRFLNLSSTGIRVVKTCIPQT---LEVLD: 437
SecStr          :HHHHHHHT TTSSTT  EEE TTS    HHHHHH-----HGGG TT  EEE TT       S  --   TT  EEE TTS  S   TTS TT--- SEEE:    
ExpBur          :beebeebbbeebbeebeebbbbebebeebeebbe-----bbeebeebebbbbbebebeebeeeb--ebbeebeebbbbebebeebeebbbee---bebbb:    

queryA       695:LRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDF-RRWMDEH: 790
                :   * *    ** * *   *  *  * *    **   *  *  *     * * **          *   *    ** **  * *   *   **    :
2z81_A_1     438:VSNNNL----DSFSLFLPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRIDYLSRWLNKN: 526
SecStr          :  SS  ----S      TT  EEE  SS  SS   GGG TT--  EEE  SS      TTGGGG TT--  EEE  SS B   HHHHHHHHHHHHH :    
ExpBur          :bbebeb----eebebebeebeebebbebebeebbebebbee--bebbebbebebeebeebbbeebee--beebebeebebebeeeebebbbebbeeb:

Input Residue Numbers for Focused Sites

ex) 2,15,123