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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [306 aa] | Variable lymphocyte receptor B, Toll-like receptor 4 :Q4G1L2_EPTBU:TLR4_HUMAN | |
2 | b | E 1 (E) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 720S 740H(V) 742D 744S 766M(F) 768E(N) 793V (identity: 57.1 %/30.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2z66_A_1 identity=30.0% |
queryA 508:ACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLES: 607 : * * * * * * * * * * ** * * * * * ** * ** * * * : 2z66_A_1 6:SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK--GCCSQSDF--GTTSLKYLDLSFNGVITMSSNF-LGL: 100 SecStr :EEETTEEE SS SS S TT EEE SS TTTTTT TT SEEE SS EE--EEEEHHHH--S S EEE S SEEEEEEEE-ET : ExpBur :eeeeeebebeeeebeebbeebeeebeebbbeebebeebeeeebeebeebebbbbbebebebe--ebbbeeeb--bbeebeebbbbebeebebeeeb-ebb: queryA 608:KSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKF-FNWTLLQQFPRLELLDLRGNKLLFLTDS: 706 : * * * * * * * ** ** * * * * ** * * * * *** * * : 2z66_A_1 101:EQLEHLDFQHSNLKQMSE------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT: 193 SecStr :TT EEE TTSEEESSTT------TTTTTT TT EEE TTS EE STTTTTT -TT EEE TT EEGGGEE S TT TT EEE TTS EE TT: ExpBur :eebebbbbeebebeebbe------ebbbeebeebebbbbbebebebeeebbbebb-eebebbebbebbbeeeebbebbeebeebeebbbbebebeebbee: queryA 707:LSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDE--HLNVKIPRLVDVICA: 804 : *** * *** * ** ** * * * * * * * * * * *** * * * * * **: 2z66_A_1 194:AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME---CA: 289 SecStr :TTTT TT EEE TTS SB SGGGTT TT EEE TTS B SSSS - TT EEE TT EE SGGGHHHHHHHHHTGGGBS GGG B---EE: ExpBur :bbebbeebeebbbbebebebbbbebbeebeebeebbbbebebeebeeeebe-ebbeebeebbbbebebbbeeeeeebbebbeebeebbeeeeebe---be: Contact : b b b b b b b queryA 805:SPGDQRGKSIVSLELT: 820 : * * * ** *: 2z66_A_1 290:TPSDKQGMPVLSLNIT: 305 SecStr :ESGGGTT BGGG : ExpBur :eeeeeeeeebbebebe: |