Protein Model on 2z64_A_1_E_1 (TEMPLATE: 2z64 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [599 aa] Toll-like receptor 4 :TLR4_MOUSE
2 b E 1 (E) branched(oligosaccharide) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 397S(N) 420L(H) 453K(R) (identity: 0.0 %/28.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2z64_A_1 identity=28.8%
queryA       259:RCFNAPFPCVPCDGGASI-NID----------RFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF--LTMLPRLEILDLS: 345
                : *       ** *   *  ***             * *   *  * **      *         **  * *  *        * *  ** *  *      :
2z64_A_1      12:QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK: 110
SecStr          :E SSS  SS  SSS SS  EEE  SS   EE TTTTSS TT  EEE SS    EE TTTTTT TT  EEE TT  -     TTTTTT TT  EEE TTS :    
ExpBur          :ebeeeeeeebbeebeeebeebbbbebebeebeeeebeebeebeebbbeebebeebeeebbebbeebbebbbebbe-beebeeebbeebeebeebbbbebe:    

queryA       346:FNYIKGSYP-------QHINISRNF----------SKLLSLRALHLRGYVFQELREDDFQPLMQLPNLS-TINLGINFIKQIDFKLFQNFSNLEIIYLSE: 427
                :      * *          *   **          * *  *    *     *     * * *   *          * *  *    **     *      :
2z64_A_1     111:LASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN: 209
SecStr          :   TT-T   TT TT  EEE  SS        GGGGT TT  EEE TTS   EE TTTTTTTTT TT   EEE TT    EE TTTTTTEEEEEEEEES :    
ExpBur          :beebe-ebebeebeebeebebbebebeebbbbebbeebeebeebbbbebebeebeeebbebbeebeeeebbbbbbbbebeebeeebbeebebebbbbebb:    
Contact         :                                                                    b                       b       

queryA       428:NRISPLVKDTRQSYANSSSFQRHIRKRRSTDFE-------FDP-----------------HSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQF: 501
                :   *   *   *  *       *        *        * *                   *   *     *  * *   *  *   **      *  *:
2z64_A_1     210:FNSSNIMKTCLQNLAG-----LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN--DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF: 302
SecStr          : SSHHHHHHHHHHT S-----EEEEEEEEE  TTSS  S   GGGGTTTTTSEEEEEEE   S--S  TTGGG GGGTT SEEEEES          TT :    
ExpBur          :beebeebeebbebbee-----bebebbbbbbeeeeeebeebebebbebbeebebebbebbbbe--ebbeebbebebbbebebbbbebbebeebeebeeeb:    
Contact         :                         b                                                                          

queryA       502:E-----------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQN: 582
                :                   **    * *  *            * *   ****  * * *        *    *  **** *      *           :
2z64_A_1     303:KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMG: 392
SecStr          :  SEEEEES   SS      TT  EEEEESBSS  B    ---  TT  EEE  SBS BEEEE SHHHHS S   EEE  S SEEEE S ------- TT:    
ExpBur          :ebeebbbeebebeebbebebeebeebbbbebeeebebeeb---ebeebeebbbbebebebeebbbeebbbbeebebbbbbebeebebeee-------beb:    

queryA       583:FTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNW: 681
                :   *  *   *      *        **  *      ***           ** **  *  *    *  *       * *    ** *      *    *:
2z64_A_1     393:LEELQHLDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISW: 485
SecStr          : TT  EEE TTSEEESTTTS TT--TT TT  E----EE TTS  EE  S TTTT TT  EEE TT EEGGGEE STTSS- TT SEEE TT    EE T:    
ExpBur          :beebeebbbeebebeebbeebbb--eebeebeb----bbbbebebebeeebbbeebeebeebebbebebeeeebbebbee-beebbebbbbebebeebee:    

queryA       682:TLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIG: 781
                :       ** **    * ****  *      ** **  * ***                   *   *    **         *    *  *   * *   :
2z64_A_1     486:GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI-----------------ETSKGILQHFPKS---------LAFFNLTNNSVACICEHQ: 559
SecStr          :TTTTT TT  EEE  SS   EEEGGGTTT TT  EEE  SS  ----------------- EEES GGGS TT---------  EEE  S  B  SGGGH:    
ExpBur          :ebbeebeebeebbbbebebeebebebbeebeebeebbbbebeb-----------------ebbeeebeebbee---------beebebbeeebbbeeebe:    

queryA       782:DFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTTC: 822
                : *  *  *             ** *              **:
2z64_A_1     560:KFLQWVKEQKQFLV-NVEQMTCATPVEMNTSLVLDFNNSTC: 599
SecStr          :HHHHHHHHTGGGBT-TGGG BB SSS SS BGGG  S TT :    
ExpBur          :ebbebbeeeeeebe-ebeebebeeeeeeeeebeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123