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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [570 aa] | Toll-like receptor 4, Variable lymphocyte receptor B :TLR4_HUMAN:Q4G1L2_EPTBU | |
2 | b | C 1 (C) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 664A(S) 716T(N) (identity: 0.0 %/31.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2z63_A_1 identity=31.5% |
queryA 216:VPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHL-K: 314 : * ** * * ** * * **** ** * * * * * * * * * *: 2z63_A_1 22:IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS----RC-------------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK: 104 SecStr : SSS SS EEE S EE TTTTTT SS EEE T----T ------------- EE TTTTTT TT EEE TT EE TTTTTT TT E: ExpBur :ebeebeeebeebebbebbbeebeeebbebbeebeebbbb----eb-------------ebebbeebbbeebeebeebebbbbebeeebebbbeebeebee: queryA 315:VLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLG----INFIKQID: 410 : * * * * * * * * * ** * * * * * * * * * * *** : 2z63_A_1 105:LVAVETNLASLENFP---IGHLKTLKELNVAHNLI-----QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA: 196 SecStr :EE TTS STT S--- TT TT EEE SS ----- GGGGG TT EEE TTS EE GGGGHHHHT TT EEE TT EE TTT: ExpBur :bbbbebebeebeebb---bbebeebeebbbbebeb-----eebebbebbeebeebeebbbbebebeebeeebbebbeebeebebbbbbbebebeebeeeb: queryA 411:FK--------LFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQC--------AAYGKALDLSLNSIF: 494 :** * ** * * * * * ** * * * ** ** * * : 2z63_A_1 197:FKEIRLHKLTLRNNFDSLNVM-----------KTCIQGLAG-------LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY---LDYYLDDII: 275 SecStr :TTT EEEEEEEES S TTHH-----------HHHHHTTTT------- EEEEEEEEE SS EE TTTTGGGGGSEEEEEEEEE---TTEEES ST: ExpBur :beebebeebbbebbbeebeeb-----------eebbebbee-------bebebbbbbbeebeeeeeebeeebbeebeebebeebebbb---eebebebbe: queryA 495:FIGPNQFENLPDIACLNLSANSNAQV-------------LSGTEFSAIPHVKYLDLTNNRLDF-----DNASALTELSDLEVLDLSYNSHYFRIAGVTHH: 576 : * * * * * * * * * ** * ** * ** **** * * * : 2z63_A_1 276:----DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL--KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK--GCCSQ: 367 SecStr :----TTTGGGTT SEEEEES EE S B S SEEEEES B SS B B SS -- EEEEES BS B B TT EEE SS BEE--EEEEH: ExpBur :----ebbebbbebbbbbbbbbbbeebeebeeebebeebbbbebebeebbebebeeb--eebbbbebeeeeebeebebeebebbbbbebebebe--ebbbe: queryA 577:LEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNML: 676 : * * ** * ** * * * * * * * * * * ** ** * * * * : 2z63_A_1 368:SDF--GTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQM------SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS------------: 446 SecStr :HHH--T S EEE S SEEEEEEEE-ET TT EEE TTSEEES ------TTS TTTT TT EEE TTS EE TTTTTT TT------------: ExpBur :ebb--ebeebeebbbbebeebebeeeb-ebbeebebbbbeebbbeeb------eeeebbeebeebeebbbbebebebeeebbbebbee------------: Contact : b queryA 677:KFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLL---LSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNP: 773 : ** * ** * * * ** * ** * *** * ** ** * * ** **: 2z63_A_1 447:-------------LEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS--LQKIWLHTNP: 529 SecStr :------------- EEE TT E--EGGGEE S TT TT EEE TTS EE TTTTTT TT EEE SS S TTTTTT TT-- EEE SS : ExpBur :-------------bebbebbebb--beeeebbebbeebeebeebbbbebebeebbeebbeebeebebbbbbebebebbbebbbeebee--beebebeebe: Contact : b queryA 774:FECTCDIGDF-RRWMDEH: 790 : * * * ** : 2z63_A_1 530:WDCSCPRIDYLSRWLNKN: 547 SecStr :B TTTTHHHHHHHHHT: ExpBur :beeeeeebebbbebbeeb: |