Protein Model on 2ft3_A_1_B_1 (TEMPLATE: 2ft3 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [303 aa] Biglycan :PGS1_BOVIN
2 b B 1 (B) polymer(polypeptide(L)) [303 aa] Biglycan :PGS1_BOVIN 48E(Q) 50S 51N(D) 52R(L) 69D 71S(Q) 72D(N) 96H(N) 131L(Y) 134D(K) 150E 152S(R) 154I(H) 173K(N) 205L(Y) 207S(R) 210F(E) 226K(E) 228F(H) 250L(R) 251L 252D(G) 290R 291Y(E) 293N(H) (identity: 20.0 %/32.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2ft3_A_1 identity=32.9%
queryA        46:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDNQLPQIPSGLP: 145
                :   **   *  **       * ***  * *       * *** *    *  *                  *   **  *  *  *    * *  **  **:
2ft3_A_1      37:VVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--------------IHEKAFSPLRKLQKLYISKNHLVEIPPNLP: 122
SecStr          :EEE  SS  SS  S   TT  EEE  SS   EE TTTTTT TT  EEE  SS   E--------------E GGGSTT TT  EEE  SS   S  SS  :    
ExpBur          :ebebeeeeeeebbeebbeebeebebeebebeebeeeebeebeebebbbbbebebee--------------eeeebbeebeebeebebbebebeebbeebb:    
Contact         :  b bbb                b bb                       b                                  b  b           

queryA       146:ESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEEDFKGL: 245
                : ** **    * *    *   * * *        *       *    * * *  *  *  *  *   *   *  **  *  * *    *  *  **    :
2ft3_A_1     123:SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-----PLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRY: 216
SecStr          :TT  EEE  SS      SGGGSS SS  EEE  S -----  BGGGS TTSS S  - S  B  SSB SS  SSS SS S  B  SS      TTSSTT :    
ExpBur          :eebbebebbebebeebeeebbeebeebebbbbbeb-----ebeeebbeebbbeebe-beebbbbebebeebbeebbeebeebbbbebebebbeeebbeeb:    
Contact         :    b b b                  b                               b b  b               b b                 

queryA       246:INLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEF: 320
                :  *  * *  *  *                  *       *  ** * *    *    *      * ** *    :
2ft3_A_1     217:SKLYRLGLGHNQIRM-----------------IENGSLSFLPTLRELHLDNNKLSRVPAG----LPDLKLLQVVY: 270
SecStr          :TT S  B  SS    -----------------  TTGGGG TT  EEE  SS   B  TT----GGG TT  EEE:    
ExpBur          :eebeebbbbebebee-----------------beeebbeebeebeebebbebebeebbee----bbebeebebbe:    
Contact         :    bbb                                     bb b

Input Residue Numbers for Focused Sites

ex) 2,15,123