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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [671 aa] | Toll-like receptor 3 :TLR3_HUMAN | |
2 | b | E 1 (E) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 304A(N) 335M(W) (identity: 0.0 %/30.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2a0z_A_1 identity=30.7% |
queryA 46:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 142 : * ** * ** * * * * * ** * * * * * * * * * : 2a0z_A_1 13:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQK-----------LPMLKVLNLQHNELSQLSDKTF: 98 SecStr :EEE SS SS SSS TT SEEE SS GGGGTT TT SEEE SS ---TTHHHH----------- TT EEE SS TTTT: ExpBur :ebebeeeeeeebbeebeeebeebebbebebeebebeebeebeebebbebbebebeebe---eebbee-----------beebeebbbeebebeebeeebb: queryA 143:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 241 : **** * * * * ** * * * * * * * * * *** ** ** *** * : 2a0z_A_1 99:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQIKEFSPGC: 195 SecStr :TT TT SEEE TTS S TTTT TT EEE SS SSS TT EEE SS B GGGTGGGTT--- EESEEE S B TTT: ExpBur :eebeebeebbbbebebeebeebbbeebeebebbbbbebebeebebbeeebbeebeebbbbebebeebeeebbebbee---bebeebbbbebebeebeeeb: queryA 242:FKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIASGAFLTMLPRL: 339 :* * * * * * * * * ** * * * *** * * ** *: 2a0z_A_1 196:FHAIGRLFGLFLNN--------------VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQL: 279 SecStr :TTTSSEE EEE TT-------------- HHHHHHHHHHTTTS EEE TTS EE TTTTGGGGGS EEE TTS -- EE TTTTTT TT : ExpBur :bebbeebbbbebbe--------------bebbeebbeebbebbbebebeebbbbebebeebeeebbebbeebebebbbbbebeb--eebbeebbeebeeb: Contact : b b queryA 340:EILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS-: 431 :* * * * ** * * * * * * * *** * * * * * * * ** ** * : 2a0z_A_1 280:EYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL: 372 SecStr : EEE S B----- EE- TTTTTT TT EEE TT B SSS EE TTT-TTT TT EEE S B TTSSTT TT EEE TT BS : ExpBur :eebebbebeb-----eeb-eeebbebbebbeebbbeebbbeeeeeeeeebebeeeb-beebeebeebbbbbbebeebeeebbeebeebeebbbbebbeeb: queryA 432:-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFF-IGPNQFENLPDIACLNLSANSNAQVLSGTEFSAI: 529 : * * * * * * * * * * *** ** * * * ** * * * * : 2a0z_A_1 373:RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-------------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALV: 458 SecStr : EE SSTTGGGTTS EEE SS EE TTTTTT TT ------------- EEE SS EEE SGGGTT TT EEE S SEEE- TTTTTT : ExpBur :eebeeebbebbeebebeebebbebebeebeeebbeebeeb-------------eebebbebebebebebebbeebeebebbebbebeebe-beeebbeeb: queryA 530:PHVKYLDLTNNRLDFDNA----SALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWN: 625 :* * * * * * * * **** * ** * * * *** * * : 2a0z_A_1 459:PSLQRLML--RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------KLEILDLQHNNLARLWKHAN---------------------: 529 SecStr :TT EEE -- SS B TT SS TTTT TT EEE SS TTTTTT T------T EEE SS GGGGSTTS---------------------: ExpBur :eebeebbb--eebebeebeeeebbbeebeebbbbbbbebebeebeeebbebbe------ebeebbbbebebeebbeeeb---------------------: queryA 626:DDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRIS: 725 : * *** * * * * ** * * * ** * * * * : 2a0z_A_1 530:--PGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------------------LGLNNLN: 578 SecStr :--TT TTTT TT EEE SS TTTT----TT TT EEE--------------------------------------------- SS : ExpBur :--eeeebebbeebeebeebbbeebebeebbeebb----eebeebeebb---------------------------------------------bbebebe: queryA 726:HLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGDQRGKSIVSLELTTC: 822 : ** *** * * ** * * * *** *** * * * * ** * * * * *: 2a0z_A_1 579:TLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC: 675 SecStr : TTTTTT TT EEE TTS HHHH-HHHHTT SEEE S EE SHHHHHHHHHHHHH- SB TTHHHH BEEESTTSTT BGGG TT : ExpBur :ebeeebbeebeebeebbbbebebeebeeebb-eebbeebeebbbbebebbbeeebbbebbebbee-eebebeebeeebebeeeeeeeeeebeebeeeee: |