Protein Model on 1ziw_A_1_I_1 (TEMPLATE: 1ziw )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [629 aa] Toll-like receptor 3 :TLR3_HUMAN
2 b I 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 435K(N) 436D(E) (identity: 0.0 %/31.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1ziw_A_1 identity=31.2%
queryA        46:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 142
                : * **   *  **       * * *  *         *     **      *         *                *  *  * *  * * *      :
1ziw_A_1       8:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQK-----------LPMLKVLNLQHNELSQLSDKTF:  93
SecStr          :EEE  SS  SS  S S TT SEEE  SS      GGGGGGGTT SEEE  SS      ---TTHHHH----------- TT  EEE  SS      TTTT:    
ExpBur          :ebebbeeeeeebbeebeeebeebebbebebeebebeebeebeebebbebbebebeebe---eebbee-----------beebeebbbeebebeebeeebb:    

queryA       143:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 241
                :     **** *  * *  *         **  * *  *     *       *      * *     *    *        *** ** **  ***  *   :
1ziw_A_1      94:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SSLKKLELSSNQIKEFSPGC: 190
SecStr          :TT TT SEEE  SS      S TTTT TT  EEE  SS  S     SSS  TT  EEE  SS    B HHHHGGGTT--- EESEEE TT     B TTG:    
ExpBur          :eebeebeebbbbebebeebeebbbeebeebebbbbbebbbebbebbeeebbeebeebbbbebebebbeeebbebbee---bebeebbbbebebeebeeeb:    

queryA       242:FKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIASGAFLTMLPRL: 339
                :*     *  * *                   * *           *  * * **   *       *       *  ***  * *            ** *:
1ziw_A_1     191:FHAIGRLFGLFLNN--------------VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQL: 274
SecStr          :GGGSSEE EEE TT--------------   HHHHHHHHHHHHTTS   EEE TTS   EE TTTTGGGGGS   EEE TTS  -- EE TTTTTT TT :    
ExpBur          :bebbeebebbbbbe--------------bebbeebbeebbebbbebebeebbbbebebeebeeebbebbeebebbbbbbbebeb--eebbeebbeebeeb:    

queryA       340:EILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS-: 431
                :*   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **    **    * :
1ziw_A_1     275:EYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQXXXXXXLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL: 367
SecStr          : EEE  S  B-----SEE- TTTTTT TT  EEE TT B   ------  EE TTT-TTT TT  EEE  S  B    TTTTTT TT  EEE TT BS  :    
ExpBur          :eebebbebeb-----eeb-eeebbebbeebeebbbeebbbee------ebebeeeb-bebbebbeebbbebbebeebeeebbebbeebeebbbbebbeeb:    

queryA       432:-PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIF-FIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAI: 529
                :  *   *  * * *        *      * *  *   *                *** ** *           *  *    ** *   * *    *   :
1ziw_A_1     368:RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-------------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALV: 453
SecStr          : EE TTTTGGGTTS   EEE TTS   EE TTTTTT TT ------------- EEE  SS  EEE  SGGGTT TT  EEE  S SEEE-  TTTTTT :    
ExpBur          :eebeeebbebbeebebeebbbbebebbebeeebbeebbeb-------------eebebbebebebebebebbeebeebebbebbebeebe-bbeebbeeb:    
Contact         :    bb                                                                                              

queryA       530:PHVKYLDLTNNRLDFDNA----SALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWN: 625
                :*    * *   *    *     *    *  *  **** *            **       *  * * ***   *    *                     :
1ziw_A_1     454:PSLQRLML--RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------KLEILDLQHNNLARLWKHAN---------------------: 524
SecStr          :TT  EEE --TTS  B TT SS TTTT TT  EEE  SS      TTTTTT T------T  EEE  SS  GGGGSTTS---------------------:    
ExpBur          :eebeebbb--eebebeebebeebbbeebeebbbbbbbbbebeebeeebbebbe------ebeebbbbebebeebbeeeb---------------------:    

queryA       626:DDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRIS: 725
                :      *   ***  *  * *  *    ** * *      * ** * *                                             *  *   :
1ziw_A_1     525:--PGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------------------LGLNNLN: 573
SecStr          :--TTS   TTTT TT  EEE  SS      TTTT----TT TT  EEE---------------------------------------------  SS   :    
ExpBur          :--eeeebebbeebeebbebbbbbbebeebbeebb----eebeebeebb---------------------------------------------bbebebe:    

queryA       726:HLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDE: 789
                : **        *** * *  **     *          *  *    *** ***  *  *  *  *:
1ziw_A_1     574:TLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE: 637
SecStr          :   TTTTTT TT  EEE TTS   B  HHHH-HHHHTT SEEE TT    B     SSEE  SS :    
ExpBur          :ebeeebbeebeebebbbbbebebeebeeebb-eebeeebeebbbeebeeeeeeeeeeeeeebeee:

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