[pdbjlvh2]Protein Model on 1gwb_A_1_E

Protein Model on 1gwb_A_1_E_1 (TEMPLATE: 1gwb )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [266 aa]	PLATELET GLYCOPROTEIN IB ALPHA CHAIN :GPBA_HUMAN
2	b		E 1 (A)	non-polymer(ACY)	ACETIC ACID	732L 733S(N) 734E(G) 758T(S) 759K(H) (identity: 20.0 %/35.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1gwb_A_1 identity=35.6%

queryA       569:RIAGVTHHLEF---IQNFTNLK--------VLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNE: 657
                :    *  ***      * * *          * ** *  **           *  *      *  *  *           *  *  **** * *   *  :
1gwb_A_1       6:EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT---------LPVLGTLDLSHNQLQSLPLL:  96
SecStr          : EE STT  EEE  SS  SS  S TTSS SEEE  S   SEEEGGGGTT TT  EEE TTS   EEE  S --------- TT  EEE  S   SS    :    
ExpBur          :eeeeeeeeeebebbeeebeeebeebeeebbbbebbebebeebebeebbebeebeebbbbebebeebebeee---------beebbbbbbbebebeebbeb:    

queryA       658:AFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALE: 757
                :    *** ** *    * *       *     *  * * ** *  *   *   *  *  * *  *    ** * *     *  * *  * * ** *    :
1gwb_A_1      97:G-QTLPA-LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG: 194
SecStr          :T-TT TT-  EEE  SS      TTTT S TT  EEE TT   S   TTTTTT TT  EEE  SS  S   TTTTTT TT  EEE  SS      TTTTT:    
ExpBur          :b-ebbee-bebbbbbebebeebeeebbeebeebeebebbebebeebbeebbeebeebeebbbbebebbebeeebbeebeebebbbbbebebebbbeebbe:    
Contact         :                                                                          bbb                       

queryA       758:TKTTTKLSMLELHGNPFECTCDIGDFRRWMDEH: 790
                :      *    *****  * * *  ****    :
1gwb_A_1     195:SHL---LPFAFLHGNPWLCNCEILYFRRWLQDN: 224
SecStr          :TS --- SEEE  SS B  SSSHHHHHHHHHHT:    
ExpBur          :eee---beebbbbebebebeeebbebeebbeeb:    
Contact         :bb

Protein Model on 1gwb_A_1_E_1 (TEMPLATE: 1gwb )

Input Residue Numbers for Focused Sites