[pdbjlvh2]Protein Model on 7sig_A_1_D

Protein Model on 7sig_A_1_D_1 (TEMPLATE: 7sig )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [276 aa]	MHC class I antigen :F4NBT2_HUMAN
2	b		D 1 (A)	non-polymer(FLC)	CITRATE ANION	132R 134Y(H) 136Q (identity: 66.7 %/76.8 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7sig_A_1 identity=76.8%

queryA        22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
                :****  ** *  *********** ************* ******  ***** **** ***** *       *  *  ** *************  * * *:
7sig_A_1       1:GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRESLRNLRGYYNQSEAGSHIIQRMYG: 100
SecStr          :- EEEEEEEEEE  TTS S EEEEEEEETTEEEEEEETTSSS   EE SGGGTT  HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  SSS  EEEEEEE:    
ExpBur          :-ebebbbebebbbeeeeeebebbbebebbebebbebebeeeeeebeeebebbeebeeebbeebbeebeebbeebbeebeebbeeeeeeeeeebebebebb:    

queryA       122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
                :* ****** ***  * *******  ***** **** ******   *   *  **  *****  *****  *** *****    ********** ******:
7sig_A_1     101:CDLGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPVSDHEAT: 200
SecStr          :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEE SHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHS  B  EEEEEEEESSSSEEE:    
ExpBur          :bebbeebeeeebbbebbbeeeebbebeeebeebebeeebbeebeeeeeeeebbeebeeebeeebbeebeebbeebeeebeeeeebeeebbeeeeeeeebb:    
Contact         :          b b b                                                                                     

queryA       222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 297
                :****************** ***  ************** **************************** * **** *:
7sig_A_1     201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP: 276
SecStr          :EEEEEEEEBSS  EEEEEETTEE TTTEEE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEE    :    
ExpBur          :bbbebebbbbbebebebeeeeeebeeebeebeeeeeeeebbebbbbbebeeeebeebbbbbebebbeeeeeeeeee:

Protein Model on 7sig_A_1_D_1 (TEMPLATE: 7sig )

Input Residue Numbers for Focused Sites