[pdbjlvh2]Protein Model on 6id4_A_1_J

Protein Model on 6id4_A_1_J_1 (TEMPLATE: 6id4 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [274 aa]	MHC class I antigen :F6IQY1_HUMAN
2	b		J 1 (U)	polymer(polypeptide(L)) [9 aa]	peptide	26L(M) 28Y 30H(Y) 66M 84E 87S(N) 88A(V) 91T(Q) 94I(T) 97V 98N(D) 101T 105Y 116L(I) 120H(Y) 135E(R) 137F(D) 164S(T) 167K 168S(W) 173E(A) 176H(Q) 177Q 180Y 184T(R) 188W 192Y (identity: 40.7 %/79.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6id4_A_1 identity=79.6%

queryA        22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
                :****  ** ************** ************* **** ** ***** **** **** ***      *  ** * ********** **** * * *:
6id4_A_1       2:GSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEDGSHTIQIMYG: 101
SecStr          :  EEEEEEEEEE  TTTSS EEEEEEEETTEEEEEEETTSSS S EE STTTTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT  TTS  EEEEEEE:    
ExpBur          :eebbbebebebebbeeeeeeebebebebbebebbebbbebeeeebbeebebbeebeeebbeebbeebeebbeebeeebeebeeeeeeeeeeebebebbbb:    
Contact         :    b b b                                   b                 b  bb  b  b  bb  b   b          b   b 

queryA       122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
                :*  ********** * *******  ********** * ****   *   *  ** ******  *****  *** *****    ***** ***********:
6id4_A_1     102:CDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHAAEQQRAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 201
SecStr          :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEEE SSSEEE:    
ExpBur          :bbbbeeeeeeebbbebbbeeeebbebeeebeebebeeebbeebeeeeeeeebbeebbebbebebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :             b b                          b  bb    b  bb  b   b   b   b                             

queryA       222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRW: 295
                :****************** ***  ******************************************* * ****:
6id4_A_1     202:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW: 275
SecStr          :EEEEEEEEBSS  EEEEEETTEE GGGEEE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEEE :    
ExpBur          :bbbbbebbbbbebebbbbeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebebbeeeeeeee:

Protein Model on 6id4_A_1_J_1 (TEMPLATE: 6id4 )

Input Residue Numbers for Focused Sites