[pdbjlvh2]Protein Model on 5wmo_A_1_C

Protein Model on 5wmo_A_1_C_1 (TEMPLATE: 5wmo )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [276 aa]	HLA class I histocompatibility antigen, B-7 alpha chain :1B07_HUMAN
2	b		C 1 (C)	polymer(polypeptide(L)) [9 aa]	RPP peptide from EBV	28Y 30H(Y) 80Y 83R 84E(N) 87S(I) 88A(Y) 91T(Q) 94I(T) 97V(E) 98N(S) 101T(N) 105Y 116L 118W(S) 120H(Y) 135E(D) 137F(Y) 144Y 164S(T) 168S(W) 173E 176H(Q) 177Q(R) 180Y 184T(E) 188W 192Y (identity: 35.7 %/79.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5wmo_A_1 identity=79.0%

queryA        22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
                :****  ** **************************** ******  ***** **** ***** *      **  *  ** **************** * *:
5wmo_A_1       1:GSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYG: 100
SecStr          :  EEEEEEEEEE  TTS S EEEEEEEETTEEEEEEETTSSS   EE SGGGTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  SSS  EEEEEEE:    
ExpBur          :eebbbbbebebebbeeeeebebebebebbebebbebeeeeeeeebeeebebbeebeeebbeebbeebeeebeebeeebeebeeeeeeeeeeebebebebb:    
Contact         :      b b                                                 b  bb  bb  b  b  bb  b   b          b b b 

queryA       122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
                :*  ***** ***  * *******  ********** ******   *   * ***  *****  *****  *** **  *    *****************:
5wmo_A_1     101:CDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEAT: 200
SecStr          :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEEE SSSEEE:    
ExpBur          :bebbeebeeeebbbebbbeeeebbebeeebeebebeeebbeebeeebeeeebbeebeeebeeebbeebeebbeebeeebeeebebeeebbeeeeeeeebb:    
Contact         :             b b      b                   b   b    b  bb  b   b   b   b                             

queryA       222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 297
                :****************** ***  ************** **************************** * **** *:
5wmo_A_1     201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP: 276
SecStr          :EEEEEEEEBSS  EEEEEETTEE TTT EE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEE    :    
ExpBur          :bbbbbebbbbbebebebeeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebeeee:

Protein Model on 5wmo_A_1_C_1 (TEMPLATE: 5wmo )

Input Residue Numbers for Focused Sites