[pdbjlvh2]Protein Model on 5w1v_A_1_D

Protein Model on 5w1v_A_1_D_1 (TEMPLATE: 5w1v )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [272 aa]	HLA class I histocompatibility antigen, alpha chain E :HLAE_HUMAN
2	b		D 1 (D)	polymer(polypeptide(L)) [201 aa]	GF4 T cell receptor alpha chain	90D 94I 169N 170D 172S 175E 176H 179A (identity: 100.0 %/98.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5w1v_A_1 identity=98.5%

queryA        23:SHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGC: 122
                :****************************************************************************************************:
5w1v_A_1       2:SHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGC: 101
SecStr          :  EEEEEEEEE  TTT S EEEEEEEETTEEEEEEESSSSS S EE STTTSSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT  TTS  EEEEEEEE:    
ExpBur          :eebbebebebebbeeeeebebbbebebbebebbebbeeeeeeebeeebebbeeeeeebbeebbeebeebbeebeeebeebeebeeeeeeeebebebebbb:    
Contact         :                                                                   b   b                            

queryA       123:ELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATL: 222
                :***** **********************************************************************************************:
5w1v_A_1     102:ELGPDRRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATL: 201
SecStr          :EE SSSSEEEEEEEEEETTEEEEEE TTSSSEEESSTTTHHHHHHHTTTTTHHHHHHHHHTHHHHHHHHHHHHTHHHHTS B  EEEEEEEE SSS EEE:    
ExpBur          :ebbeebeeeebbbeebbeeeebbbbbeebeebebeeebbeeebeeeeeeeebeebeeebeeebbebbeebbeebeeebeeeeebeeebeeeeeeeeebbb:    
Contact         :                                              bb b  bb  b                                           

queryA       223:RCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 297
                :******************   ******************************************************:
5w1v_A_1     202:RCWALGFYPAEITLTWQQXXXGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 276
SecStr          :EEEEEEEBSS  EEEEE ---   TT EE   EE SSS EEEEEEEE  TT  TT EEEEE TT SS EEE    :    
ExpBur          :bbbbbbbbebebebebee---eeeeeeeeeeeeeeeeebbebbbbbebeeeebeebbbebebeeeeeeeeeeeee:

Protein Model on 5w1v_A_1_D_1 (TEMPLATE: 5w1v )

Input Residue Numbers for Focused Sites