[pdbjlvh2]Protein Model on 5vz5_A_1_I

Protein Model on 5vz5_A_1_I_1 (TEMPLATE: 5vz5 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [277 aa]	HLA class I histocompatibility antigen, B-15 alpha chain :1B15_HUMAN
2	b		I 1 (A)	non-polymer(SO4)	SULFATE ION	108Q 109S (identity: 100.0 %/78.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5vz5_A_1 identity=78.3%

queryA        22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
                :****  ** *  *********** ************* ******* ***** **** *******       *  *  ** **************** * *:
5vz5_A_1       1:GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRMAPRAPWIEQEGPEYWDRETQISKTNTQTYRESLRNLRGYYNQSEAGSHTLQRMYG: 100
SecStr          :  EEEEEEEEEEEETTTEEEEEEEEEEETTEEEEEEETTSSS   EE SGGGGG  HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEEE:    
ExpBur          :eebbbbbebebebbeeeeebebebebebbebebbebbbeeeeeebeeebebbeebeeebbeebbeebeebbeebbeebeebeeeeeeeeeeebebebbbb:    
Contact         :                                                                                      bb            

queryA       122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
                :*  ***** ***  * *******  ***** **** ******   *   * ***  *****  *****  *** *****    *****************:
5vz5_A_1     101:CDVGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAAREAEQWRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEAT: 200
SecStr          :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHH TTHHHHHHHHTTHHHHHHHHHHHHTHHHHHS B  EEEEEEEE SSSEEE:    
ExpBur          :bbbbeebeeeebebebbbeeeebbbbeeebeebeeeeebbeebeeebeeeeeeeeeeeebeeebbeebeebbebbeeebeebeebeeebeeeeeeeeebb:    

queryA       222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPA: 298
                :****************** ***  ************** **************************** * **** * :
5vz5_A_1     201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPS: 277
SecStr          :EEEEEEEEBSS  EEEEEETTEE TTS EE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEE     :    
ExpBur          :bbbebebbbbbebebbbeeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebeeeee:

Protein Model on 5vz5_A_1_I_1 (TEMPLATE: 5vz5 )

Input Residue Numbers for Focused Sites