Protein Model on 5gsd_A_1_C_1
(TEMPLATE: 
5gsd
)Protein Model on 5gsd_A_1_C_1
(TEMPLATE: 5gsd
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HLAE_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [274 aa] | HLA class I histocompatibility antigen, A-11 alpha chain :1A11_HUMAN | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [7 aa] | Epstein Barr Virus, Latent membrane protein-2 epitope | 28Y 30H(Y) 84E 87S(N) 90D(A) 91T(Q) 94I(T) 98N(D) 105Y 116L(I) 120H(Y) 137F(D) 164S(T) 167K 168S(W) 176H(Q) 177Q 180Y (identity: 33.3 %/79.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5gsd_A_1 identity=79.6% |
queryA 22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
:**** ** ************** ************* **** ** ***** **** **** *** * ** * ********** **** * * *:
5gsd_A_1 1:GSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEDGSHTIQIMYG: 100
SecStr : EEEEEEEEEE TTSSS EEEEEEEETTEEEEEEETTSSS S EE SGGGTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT TTS EEEEEEE:
ExpBur :eebbbbbebebebbeeeeebebebebebbebebbebebeeeeeebeeebebbeebeeebbeebbeebeebbeebeeebeebeeeeeeeeeeebebebebb:
Contact : b b b b bb b b b b b
queryA 122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
:* ********** * ******* ********** * **** * * ** ****** ***** *** ***** ***** ***********:
5gsd_A_1 101:CDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHAAEQQRAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 200
SecStr :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT B EEEEEEEESSSSEEE:
ExpBur :bbbbeebebeebebebbbeeeebbebeeebeebeeeeebbeebeeeeeeeebbeebeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:
Contact : b b bb bb b
queryA 222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRW: 295
:****************** *** ******************************************* * ****:
5gsd_A_1 201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW: 274
SecStr :EEEEEEEEBSS EEEEEETTEE GGG EE EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEE :
ExpBur :bbbbbebbbbbebebebeeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebee:
|
[assembly_id:1]
[help]