[pdbjlvh2]Protein Model on 4g8g_A_1_D

Protein Model on 4g8g_A_1_D_1 (TEMPLATE: 4g8g )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [276 aa]	HLA class I histocompatibility antigen, B-27 alpha chain :1B27_HUMAN
2	b		D 1 (D)	polymer(polypeptide(L)) [204 aa]	alpha chain C12C TCR	83R 86R(Q) 87S(I) 89R(K) 90D(A) 175E 176H(Q) (identity: 28.6 %/79.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4g8g_A_1 identity=79.0%

queryA        22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
                :****  ***************** ******* ***** ******  ***** **** *******      **  *  ****  ************* * *:
4g8g_A_1       1:GSHSMRYFHTSVSRPGRGEPRFITVGYVDDTLFVRFDSDAASPREEPRAPWIEQEGPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHTLQNMYG: 100
SecStr          :  EEEEEEEEEE  TTSSS EEEEEEEETTEEEEEEETTSSS   EE SGGGGGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT  TTS  EEEEEEE:    
ExpBur          :eebbbbbebebebbeeeeebebebebebbebebbbbbeeeeeeebeeebebbeebeeebbeebbeebeebbeebeeebebbbebeeeeeeeebebebbbb:    
Contact         :                                                             b  bb bb                               

queryA       122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
                :*  ***** **** * *******  ***** **** ******   *   *  **  *****  *****  *** *****    *****************:
4g8g_A_1     101:CDVGPDGRLLRGYHQDAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEAT: 200
SecStr          :EEE TTSSEEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEEE SSSEEE:    
ExpBur          :bbbbeebeeeebbbebbbeeeebbebeeebeebebeeebbeebbeeeeeeeebeebeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :                                                     bb                                             

queryA       222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 297
                :****************** ***  ************** **************************** * **** *:
4g8g_A_1     201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP: 276
SecStr          :EEEEEEEEBSS  EEEEEETTEE  TT EE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEE    :    
ExpBur          :bbbbbebbbbbebebebeeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebebee:

Protein Model on 4g8g_A_1_D_1 (TEMPLATE: 4g8g )

Input Residue Numbers for Focused Sites