[pdbjlvh2]Protein Model on 3c9n_A_1_C

Protein Model on 3c9n_A_1_C_1 (TEMPLATE: 3c9n )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [276 aa]	HLA class I histocompatibility antigen, B-15 alpha chain :1B15_HUMAN
2	b		C 1 (C)	polymer(polypeptide(L)) [9 aa]	Peptide antigen	26L(M) 28Y 30H(Y) 66M 80Y 83R 84E 87S(I) 88A(S) 90D(T) 91T(N) 94I(T) 97V(E) 98N(S) 101T(N) 102L 105Y 116L 118W(R) 120H(Y) 137F(S) 164S(T) 167K 168S(W) 171A 173E 176H(Q) 177Q(W) 180Y 188W 192Y (identity: 45.2 %/78.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3c9n_A_1 identity=78.6%

queryA        22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
                :****  ** *  *********** ************* ******* ***** **** *******       *  *  ** **************** * *:
3c9n_A_1       1:GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRMAPRAPWIEQEGPEYWDRETQISKTNTQTYRESLRNLRGYYNQSEAGSHTLQRMYG: 100
SecStr          :  EEEEEEEEEE  TTSSS EEEEEEEETTEEEEEEETTSSS   EE SGGGTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEEE:    
ExpBur          :eebebbbebebebbeeeeebebebebebbebebbebbbeeeeeebeeebebbeebeeebbeebbeebeebbeebbeebeebeeeeeeeeeeebbbebebb:    
Contact         :    b b b                                   b             b  bb  bb bb  b  bb  bb  b          b b b 

queryA       122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
                :*  ***** ***  * *******  ***** **** ******   *   * ***  *****  *****  *** *****    *****************:
3c9n_A_1     101:CDVGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAAREAEQWRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEAT: 200
SecStr          :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEEE SSSEEE:    
ExpBur          :bbbbeebeeeebbbebbbeeeebbebeeebeebeeeeebbeebbeebeeeeebeebeeebebebbeebeebbeebeeebeeebebeeebeeeeeeeeebb:    
Contact         :               b                          b  bb  b b  bb  b       b   b                             

queryA       222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP: 297
                :****************** ***  ************** **************************** * **** *:
3c9n_A_1     201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP: 276
SecStr          :EEEEEEEEBSS  EEEEEETTEE GGG EE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEE    :    
ExpBur          :bbbebebbbbbebebebeeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebeeee:

Protein Model on 3c9n_A_1_C_1 (TEMPLATE: 3c9n )

Input Residue Numbers for Focused Sites