[pdbjlvh2]Protein Model on 1ydp_A_1_C

Protein Model on 1ydp_A_1_C_1 (TEMPLATE: 1ydp )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [275 aa]	MHC class I antigen :HLAG_HUMAN
2	b		C 1 (P)	polymer(polypeptide(L)) [9 aa]	histone 2a peptide	28Y 30H(S) 80Y 83R(E) 84E 87S(N) 88A(T) 91T(H) 94I(T) 95F(D) 98N 101T 105Y 118W 135E 137F(Y) 154W 164S 167K 176H(Q) 177Q(R) 180Y 184T 188W 192Y (identity: 60.0 %/78.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1ydp_A_1 identity=78.1%

queryA        23:SHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGC: 122
                :***  **   ************  ************ * ***** ***** **** ***  ***     **  * ** *********** ******* **:
1ydp_A_1       1:SHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSASPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGC: 100
SecStr          : EEEEEEEEEE  TTS S EEEEEEEETTEEEEEEETTSSS   EE SGGGTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEEEE:    
ExpBur          :eebbbbebbbebeeeeeeeebbbbbebbebebbbbbbeeeeeebeeebebbeebeeebbeebbeebeeebeebbeebeebeeeeeeeeeeebebebbbbb:    
Contact         :     b b                                                 b  bb  bb  b  bb  b  b   b            b    

queryA       123:ELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATL: 222
                : ** ***  ****  ******** ********** *******  *   *  **  ***** ******* *** *** *    **********  * ****:
1ydp_A_1     101:DLGSDGRLIRGYERYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATL: 200
SecStr          :EE TTSSEEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHHTTHHHHHHHHHTHHHHHHHHHHHHTHHHHS  B  EEEEEEE  SSSEEEE:    
ExpBur          :bbbeebeeeebbbeebbeeeebbbbeeebeebebeeebbeebeeebeeeeebeeebeebeeebbeebeebbeebeeebeeeeebeeebbeeeeeeeebeb:    
Contact         :            b b                b         b  b        bb  b   b   b   b                              

queryA       223:RCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWK: 296
                :************ **** ***  *** *****************************************  ****:
1ydp_A_1     201:RCWALGFYPAEIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRWK: 274
SecStr          :EEEEEEEBSS  EEEEEESS B GGG EE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEE   :    
ExpBur          :ebbbebbbbbebebbbbeeeeebeeebeebeeeeeeeebbebbbbbebeeeebeebbbebebeebeeeeebebe:

Protein Model on 1ydp_A_1_C_1 (TEMPLATE: 1ydp )

Input Residue Numbers for Focused Sites