[pdbjlvh2]Protein Model on 1qqd_A_1_C

Protein Model on 1qqd_A_1_C_1 (TEMPLATE: 1qqd )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAE_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [273 aa]	HISTOCOMPATIBILITY LEUKOCYTE ANTIGEN (HLA)-CW4 (HEAVY CHAIN) :1C04_HUMAN
2	b		C 1 (C)	polymer(polypeptide(L)) [9 aa]	HLA-CW4 SPECIFIC PEPTIDE	28Y 43F 80Y 84E 87S(K) 88A(Y) 90D(R) 91T(Q) 94I(A) 95F(D) 98N 101T(K) 102L 105Y 116L 118W(R) 120H(F) 137F 164S(T) 167K 168S(W) 176H(Q) 177Q(R) 180Y 184T 188W 192Y (identity: 51.9 %/81.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1qqd_A_1 identity=81.3%

queryA        23:SHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGC: 122
                :***  ** **** ********* ************* ******  ** ** **** *******      **  ***** ********* ****** * **:
1qqd_A_1       1:SHSMRYFSTSVSWPGRGEPRFIAVGYVDDTQFVRFDSDAASPRGEPREPWVEQEGPEYWDRETQKYKRQAQADRVNLRKLRGYYNQSEDGSHTLQRMFGC: 100
SecStr          : EEEEEEEEEEE TT SS EEEEEEEETTEEEEEEESSSSS   EESSHHHHTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  SSS EEEEEEEEE:    
ExpBur          :eebbebebebbbeeeeeebebebebebeebebbebebeeeeeebeeeeebbeebeeebbeebbeebeeebeebeeebeebbeeeeeeeeeebebebbbbb:    
Contact         :     b              b                                    b   b  bb bb  bb  b  bb  b          b b b  

queryA       123:ELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATL: 222
                : ****** **** *********  ********** ******   *   * ***  ***** ******  *** *****   * ********* *******:
1qqd_A_1     101:DLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHEATL: 200
SecStr          :EE SSSSEEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT     EEEEEEEE SSS EEE:    
ExpBur          :ebeeeeeeeebbbebbbeeeebbebeeebeebeeeeebbeebbeeeeeeebbeeeeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebbb:    
Contact         :              b                          b  bb       bb  b   b   b   b                              

queryA       223:RCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRW: 295
                :***************** ***  ********************************************* ****:
1qqd_A_1     201:RCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRW: 273
SecStr          :EEEEEEESSS  EEEEEETTEE GGG EE   EE SSS EEEEEEEEE TT GGGEEEEEE TT SS EEE  :    
ExpBur          :bbebeebbbbebebbbeeeeeebeeeeeebeeeeeeeebbebbbbbebeeeebeebbbebebebbeeeeebee:

Protein Model on 1qqd_A_1_C_1 (TEMPLATE: 1qqd )

Input Residue Numbers for Focused Sites