Protein Model on 1q94_A_1_C_1
(TEMPLATE: 
1q94
)Protein Model on 1q94_A_1_C_1
(TEMPLATE: 1q94
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HLAE_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [275 aa] | HLA class I histocompatibility antigen, A-11 alpha chain :1A11_HUMAN | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [9 aa] | nonamer reverse transcriptase (AIFQSSMTK) :POL_HV1Z2 | 26L(M) 28Y 30H(Y) 80Y 84E 87S(N) 88A(V) 91T(Q) 94I(T) 97V 98N(D) 101T 105Y 118W(I) 120H(Y) 135E(R) 137F(D) 144Y 164S(T) 167K 168S(W) 171A 173E(A) 176H(Q) 177Q 180Y 184T(R) 188W 192Y (identity: 44.8 %/79.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:1q94_A_1 identity=79.3% |
queryA 22:GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHG: 121
:**** ** ************** ************* **** ** ***** **** **** *** * ** * ********** **** * * *:
1q94_A_1 1:GSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEDGSHTIQIMYG: 100
SecStr : EEEEEEEEEE SSS S EEEEEEEETTEEEEEEETTSSS S EE SHHHHTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT TTS EEEEEEE:
ExpBur :eebbbebebebebeeeeeeeebebbbebeebebbebbeeeeeeebeeebebbeebeeebbeebbeebeebbeebeeebeebeeeeeeeeeeebebebebb:
Contact : b b b b b bb b b bb b b b b
queryA 122:CELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEAT: 221
:* ********** * ******* ********** * **** * * ** ****** ***** *** ***** ***** ***********:
1q94_A_1 101:CDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHAAEQQRAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 200
SecStr :EEE TT EEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHTTHHHHHHHHHTTHHHHHHHHHHHHTHHHHT B EEEEEEEEEETTEEE:
ExpBur :bbbbeebeeeebbbebbbeeeebbbbeeebeebeeeeebbeebeeebeeeebbeebeeebebebbebbeebbeebeeebeeeeebeeebeeeeeeeeebb:
Contact : b b b b bb b b bb b b b b
queryA 222:LRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWK: 296
:****************** *** ******************************************* * **** :
1q94_A_1 201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 275
SecStr :EEEEEESBBSS EEEEEESS B SSEEE EE SSS EE EEEEEESS TTTEEEEEE TTSSS EEE :
ExpBur :bbbebeebbbbebebebbeeeeebeeeeeeeeeeeeeeebbbbbbbbebeeeebeebbbbbebebbeeeeeeeee:
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[assembly_id:1]
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