[pdbjlvh2]Protein Model on 6jyt_B

Protein Model on 6jyt_B_1 (TEMPLATE: 6jyt )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(R1AB_SARS)	B 1 (B)	polymer(polypeptide(L)) [597 aa]	Helicase :R1AB_CVHSA

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6jyt_B_1 identity=99.8%

queryA      5302:AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGS:5401
                :******************************************************************* ********************************:
6jyt_B_1       3:AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGUSYYCKSHKPPISFPLCANGQVFGLYKNTCVGS: 102
SecStr          :S EE TTT  EES EESSSTT  B  HHHHHHHHTTSS   EESSSB    STT     GGG EE SSSEE TTT  SS EESEETTEE  TTTTT    :    
ExpBur          :bebebbbbebebbbbbeebebebebbbebbeebbeebebeebbbeeebebebeeeebebbeebbbbeebbebeeeeeeebeebbeeeebebeeeeebebe:    

queryA      5402:DNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTF:5501
                :****************************************************************************************************:
6jyt_B_1     103:DNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTF: 202
SecStr          :S HHHHHHHHH  S BHHHHHHHHHS HHHHHHHHHHHHHHHHHHGGGS  EEEEE  SSSEEEEEE TTS     STT  EEEEEE SS EEEEEEEEE:    
ExpBur          :eebeebbebbeeebbebebbeebbebeeebbbbbbbbbebebbeeeeebbebebeeeeeeebbebebeeeeeebeeeeebebbbbeeeeeeeeebbbbbb:    

queryA      5502:EKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP:5601
                :******************************** **************************************** **************************:
6jyt_B_1     203:EKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVUPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGUQKYSTLQGPPGTGKSHFAIGLALYYP: 302
SecStr          :EE SSTTEEEEEESS     SS EEEE         S SS    B SS  S    S   GGGGGGHHHHHHTTTBSEEEEE  SSSSTTHHHHTTTTTST:    
ExpBur          :eebeeeebbbbeeeeeeebeeebebebeeeebeebebebbbeeeeeeeeeebeeeeeeeeebeebeebbeebbebbbbbbbbbbbbbebebbbbbbbbbe:    

queryA      5602:SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIG:5701
                :**************************** ************************************************ **********************:
6jyt_B_1     303:SARIVYTACSHAAVDALCEKALKYLPIDXCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISUATNYDLSVVNARLRAKHYVYIG: 402
SecStr          :T  EEEEESSHHHHHTTTTTSSSSS   -     SS  SS    SS  SS   SEEEEESTT  SEE SEEEE   TT  HHHHHHHHHHEE SEEEEEE:    
ExpBur          :ebebbbbbeeeebbbebbeebeeebeee-bbbbbeeebeeeeeeeeeeeeeebebbbbbbeebeebebebbbbbbbbebebbbbbbbbeebebebbbbbb:    

queryA      5702:DPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFL:5801
                :**************************** ****** ************************************* **************************:
6jyt_B_1     403:DPAQLPAPRTLLTKGTLEPEYFNSVCRLUKTIGPDUFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKUFYKGVITHDVSSAINRPQIGVVREFL: 502
SecStr          : TTS     TT  BS   GGGSSHHHHHHTTS  SS   EESSS HHHHTHHHHTTS S  EES      EE           SSS   HHHHTTSTTSS:    
ExpBur          :bbbbbebebebbeeeebebebbbbbbebbeeeebebbbeebeebbeebbebbbebebeeebeeeeeeeebbbeebebeeeeeeeebbbbeebbbeeeeee:    

queryA      5802:TRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRN:5897
                :*************************************************************************** ********************:
6jyt_B_1     503:TRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIUSDRDLYDKLQFTSLEIPRRN: 598
SecStr          :TT SS SS EEE SSSTTTTHHHHS SS    TTT SS   SBEEEE  SSSTTTT HHHHHHHHTS SSB EEE   SSSTTT  SEE  SS   :    
ExpBur          :eeeeeeeebbbbbbeebbbebeeeeeeeeeeebeebeeeebeebebbbbeeeeebeeebebbbbbbbbeebbbbbbebeebeeebebeeeeeeeee:

Protein Model on 6jyt_B_1 (TEMPLATE: 6jyt )

Input Residue Numbers for Focused Sites