Protein Model on 7vbd_B_1 (TEMPLATE: 7vbd )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description
1 a A(NCAP_SARS2) B 1 (B) polymer(polypeptide(L)) [117 aa] Nucleoprotein :NCAP_SARS2
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7vbd_B_1 identity=94.4%
queryA        48:NTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIG: 147
                :************************************************     ***********************************************:
7vbd_B_1       1:NTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRXXXXXMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIG: 100
SecStr          :  B SB  EE  SSS     TT      TTS GGG EEEEEEE  EE ----- EE   EEEEEETT STTTT  TT   TTEEEEE TT  SS  TTT :    
ExpBur          :eeebbbeebebeeeeebebeeeebbbebeebeeebbbbbbebbeeeee-----eeeeeeebebbbbebeeeeebeeeeeeebbbbbbeeeeeeeebeebe:    

queryA       148:TRNPANNAAIVLQLPQGTTLPKGF: 171
                :***************  *******:
7vbd_B_1     101:TRNPANNAAIVLQLPXXTTLPKGF: 124
SecStr          : B TTS   B     --    TT :    
ExpBur          :ebeeeeeeeeebeee--eeebeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123