Protein Model on 8ajl_A_1_F_1 (TEMPLATE: 8ajl )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) A 1 (A) polymer(polypeptide(L)) [1109 aa] Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4
2 b F 1 (N) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 778Y(D) 783N 785S 786Q (identity: 75.0 %/87.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8ajl_A_1 identity=87.6%
queryA        19:CTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINH------TFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQ: 112
                :* *      ** **  ** ******* ***** * **** **** ****     *        * ** *** ** ********** *** ****  * **:
8ajl_A_1       2:CGTLSNKSPPNMTQFSSSRRGVYYPDDIFRSDVLHLTQDYFLPFNSNVTRYLSLNSDSDRIVRFDNPIIPFGDGVYFAATEKSNVIRGWIFGSTLDNTSQ: 101
SecStr          :     SB      EEEESS  EE  SS    S EEEEEEEE  TTEEEEEEEEE SS TTSBEE    EE  S EEEEEEESS  EEEEEEESS STTSE:    
ExpBur          :bbeeeeebeeeeeebebbebbbbbbeeeebbeeeeebeeebbbbebebbbbbbeeeeeeeebbbbbeebebeebbbbbbbbebbbbbbbbbbbebeeeee:    

queryA       113:SVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSG: 212
                :* ** ****  *** *** *** * **** * *    * *  ** *** ** *  * ****** ************* **** ** ** **** * ****:
8ajl_A_1     102:SAIIMNNSTHIVIRVCNFQLCDDPMFAVSRPTGQHYKTWIYTNARNCTYEYVSKSFQLDVSEKPGNFKHLREFVFKNVDGFLHVYSGYEPIDVARGLPSG: 201
SecStr          :EEEEEE SSSEEEEEEEEEEEEEEEEEEESSS S SEEEEEEEE    EEEE            SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS    :    
ExpBur          :bbbbbbbbeeebbebbebebbebbbbbbbeeeebeeeebbeeeeeeeeeeeebeeeeeebebeeeebeebbbbbbbeeeeebbbbbbeeebeeeebbbee:    

queryA       213:FNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGD: 312
                :*  ***************** * * ***    **  ***************** ************** ** **** ****   *********** *   :
8ajl_A_1     202:FSVLKPIFKLPLGINITNFRVIMTMFSPTTSNWGAEAAAYFVGYLKPTTFMLKFDENGTITDAVDCSQDPLSELKCTVKSFNVEKGIYQTSNFRVSPTKE: 301
SecStr          :  EEEEEEEE   S   EEEEEEEEEESSSSS B  SEEEEEEE EEEEEEEEE TT  EEEEEETTS HHHHHHHHTTSS   SEEEE    S    SE:    
ExpBur          :ebebeeebebebebebeebbbbbbbbbeeeeebbbbebbbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbbeeeee:    

queryA       313:VVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 412
                :******************** *********  ** ************ ********** ********* *******************************:
8ajl_A_1     302:VVRFPNITNLCPFGEVFNATTFPSVYAWERTRISDCVADYSVLYNSTSFSTFKCYGVSPTKLNDLCFSSVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 401
SecStr          :EEE      B THHHHHT SS  BGGG EEEEE SEE  GGGGTTT   SEEEEESS TTGGGG EESEEEEEEEEEETTGGGGSSTT  SHHHHHT   :    
ExpBur          :bbbbeeeeeebebeebbeeeebbbbebbeeeebeebbbbbeebeeeeebeeeebeebeeeebebbbbbbbebbbbbbbeebbebbbeeeebebbbebbeb:    

queryA       413:PDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCG: 512
                :**** *** **** * ********** ** ****** ************* ******** *** *** ***  * *************************:
8ajl_A_1     402:PDDFTGCVIAWNTANLDATSTGNYNYYYRSLRHGKLKPFERDISNVPFSPEGKPCTPPAFNCYRPLNTYGFNPTVGIGYQPYRVVVLSFELLNAPATVCG: 501
SecStr          : TT  EEEEEEE HHHHTSSGGG   EEE   SS   TT        B SSSS   SS TT B SEEE    TTS TTTSEEEEEEEEEE  SS   EE :    
ExpBur          :beebebbbbbbebbeebbeeeeeeebebbbeeeeebeeeeebeeeeebbeeeeebeeeeeebeebbeebebeeeeeeeeebbbbbbbbbeeeeeebbbbb:    

queryA       513:PKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA: 612
                :***** * ******************* *************************** ********************* **************** *****:
8ajl_A_1     502:PKLSTELVKNQCVNFNFNGLTGTGVLTDSSKRFQPFQQFGRDVSDFTDSVRDPKTLEILDISPCSFGGVSVITPGTNTSSEVAVLYQDVNCTDVPTAIHA: 601
SecStr          :        TTSEEEEEETTEEEEEEEEE      TT  EEE TT  EEEEE TTT  EEEEE TT S EEEEE  TTT    EEEETT  TTTHHHHTTT:    
ExpBur          :eeeeeeeeeeebbebbbbbeeeebbbeeeeeebeeeebbbeeeeeebebbbbbeeeebbebeebeeeebbbbbbbbeebeebbbbbeebebeebeeebbb:    

queryA       613:DQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVS: 712
                :******** **** ****************  ******************        *************  ****************** ********:
8ajl_A_1     602:DQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGAENSIAYSNNTIAIPTNFSISVTTEVMPVS: 701
SecStr          :TTS HHHHGGGSSSSEEE SSSEEESSEE SS B  SEEEETTEEEEEE --------  EEEEEEB  S        TTEEEEEEEEEEEEEEEEEE  :    
ExpBur          :eebeeebeebbeeeeebebeebbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebebebbbbb:    

queryA       713:MAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAD: 812
                :******** ********** ********************* *** ****************  * ************* ********************:
8ajl_A_1     702:MAKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALSGIAVEQDKNTREVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLAD: 801
SecStr          :  EEEE HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHTT        S  EETTEEGGGTSB TTSSS SBHHHHHHHHHS  SS:    
ExpBur          :bbbbebebeebbbeebeebbebbeeeeeebeebeebbeebbebbbebbeebbeebeeeeeebeebebeebebeebbbeeeeeeebbebbbbbbeebeeee:    
Contact         :                                                                 b    b bb                          

queryA       813:AGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 912
                :************** ********************** **************************************************************:
8ajl_A_1     802:AGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 901
SecStr          :SSS   GGGGS  GGG  HHHHHHHTTEEEE  SS HHHHHHHHHHHHHHHHHTTTHHHHSS     HHHHHHHHHHHHT  THHHHTTHHHHHHHHHHH:    
ExpBur          :eeeebeeeebeeeeeeeeeebebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeeb:    

queryA       913:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1012
                :****************************************************************************************************:
8ajl_A_1     902:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1001
SecStr          :HHHHHHHHHH SSTTHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebeeebeebeeebeebbebbeebbebbeebbeebeeeeebebbebebbeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbe:    

queryA      1013:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI:1112
                :****************************************************************** ************ ********************:
8ajl_A_1    1002:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVSGNCDVVI:1101
SecStr          :HHTSS   STTTTSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SS EEEE TTS   EE BTTTEEEEEETTSST:    
ExpBur          :ebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebbebbbeeeebbbbeebbbbbeeeebbbbbeebbbeeebbeeebeeeeebeeee:    

queryA      1113:GIINNTVYDPLQPELD:1128
                :****************:
8ajl_A_1    1102:GIINNTVYDPLQPELD:1117
SecStr          :T EE   B TTGGG  :    
ExpBur          :eeeeeebeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123