Protein Model on 8aja_A_1_F_1 (TEMPLATE: 8aja )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) A 1 (A) polymer(polypeptide(L)) [1090 aa] Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4
2 b F 1 (N) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 778Y(D) 783N 785S 786Q (identity: 75.0 %/82.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8aja_A_1 identity=82.6%
queryA        19:CTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINH------TFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQ: 112
                :* *      **  *  ** ******* ***** * **** **** ****     *        * **  ** ************* *** ****  * **:
8aja_A_1       2:CGTISNKTPPNMNQFSSSRRGVYYPDDIFRSDVLHLTQDYFLPFNSNVTRYLSLNADSNRIVRFDNPILPFGDGIYFAATEKSNVIRGWIFGSTLDNTSQ: 101
SecStr          :    SSB      EEEESSTTEE  SS    SEEEEEEEEE  TTEEEEEEEEEEEGGGTEEEE    EE  S EEEEEEESS  EEEEEEESS STTS :    
ExpBur          :ebebeeeeeeeeeeeebbebbbbbbeeeebbeeeeebeeebbbbebebbbbbbeebeeeeebbbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeeee:    

queryA       113:SVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSG: 212
                :* ** ****   *  *** *** * * **   *    *    ** *** ** *  * ****** ************* **** **  * ***  * ****:
8aja_A_1     102:SAIIVNNSTHIIIKVCNFQLCDDPMFTVSR--GQHYKTWVYTNARNCTYEYVSKSFQLDVSEKNGNFKHLREFVFKNVDGFLHVYSAYEPIDLARGLPSG: 199
SecStr          :EEEEEEETTEEEEEEE  EEEEEEEEEEET--TEEEEEEEEEE  S  EEEE        S   SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS    :    
ExpBur          :bbbbbebbeeebbbbbbbebbebbbbbbbe--eeeeeebbeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebbbbbeeeebeeeebbbee:    

queryA       213:FNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGD: 312
                :*  **** ********* **   * ***    *    ****************  ************* ** ****  ***   *********** *   :
8aja_A_1     200:FSVLKPILKLPLGINITSFRVVMTMFSPTTSNWLAESAAYFVGYLKPTTFMLKFNENGTITDAVDCSQDPLSELKCTLKSFNVEKGIYQTSNFRVSPTQE: 299
SecStr          :  EEEEEEEE       EEEEEEEEEESSSSS B   EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S   SEEEE    S     E:    
ExpBur          :ebebeeebebebebebebbbbbbbbbbeeeeebebbebbbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbbeeeee:    

queryA       313:VVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 412
                :*************  ***** ********* *** ***** ****** **********  ** ****  **** *      *** ***************:
8aja_A_1     300:VVRFPNITNLCPFDKVFNATRFPSVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGQTGVIADYNYKL: 399
SecStr          :EEE      B  HHHHHS S   BGGG EEEEE SEE  GGGGTTT   SEEEEESS GGGGGG EESEEEEEEEEEEGGGGGGSSTT  SHHHHHT   :    
ExpBur          :bbbbbeeeeebebeebbeeeebbbbbbbeeeebeebbbbbeebeeeeeeebeebeebeeeebebbbbbbbebbbbbbbbebbebbbeeeebebbbebbeb:    

queryA       413:PDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCG: 512
                :**** *** ****   **      ** **  *  ** ***** **               *    *  * *     * **  ******************:
8aja_A_1     400:PDDFTGCVIAWNTAKQDAG-----NYYYRSHRKTKLKPFERDLSN------------SDENGVRTLSTYDFNPNVPIEYQATRVVVLSFELLNAPATVCG: 482
SecStr          : TT  EEEEEEE TTT  E-----EEEEE   SS   TT      ------------B TTS B EEEEEE TTS GGGSEEEEEEEEEE  SS   EE :    
ExpBur          :eeebebbbbbbebbeebee-----ebebbeeeeeebeeeeebeee------------eeeeeeeebeebebeeebeeeebbbbbbbbbbeeeebebbbbb:    

queryA       513:PKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA: 612
                :***** * ************ ****** ****** ******* ********** * ************************************** *****:
8aja_A_1     483:PKLSTQLVKNQCVNFNFNGLKGTGVLTDSSKRFQSFQQFGRDASDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIHA: 582
SecStr          :        TTSEEEEEETTEEEEEEEEE      TT  EEE TT  EEEEE TTT  EEEEE TT S EEEEES TTT S  EEEETT  TTTHHHHTTT:    
ExpBur          :eeeeeeeeeeebbebbbbbeeeebbbeeeeeebeeebbbbeeeeeebebbbbbeeeebbebeebeeeebbbbbbbbeebeebbbbbeebebeebeeebbb:    

queryA       613:DQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVS: 712
                :******** **** ****************  ******************        *************  **** ** ********** ********:
8aja_A_1     583:DQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVS: 682
SecStr          :TTS HHHHGGGSSSSEEEETTEEEESSEE SS B  SEEEETTEEEEEE --------  EEEEEEB  S        TTEEEEEEEEEEEEEEEEEE  :    
ExpBur          :ebbeeebeebbeeeeebebebbbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbb:    

queryA       713:MAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAD: 812
                :******** ******* ** ***************** *** *** ** *************  * ************* ********************:
8aja_A_1     683:MAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLAD: 782
SecStr          :  EEEE HHHHHH S HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHS S        S  EETTEEGGGTSB TTSSS  BHHHHHHHHHS  TT:    
ExpBur          :bbbbbbebeebbbeebeebbebbeeeeeebeebeebbeebbebbbebbeebbbebeeeeeebeebebeebebeebbbeeeeeeebbebbbbbbeebeeee:    
Contact         :                                                                 b    b bb                          

queryA       813:AGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 912
                :************** ********************** **************************************************************:
8aja_A_1     783:AGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 882
SecStr          :  S   TTTTS  GGG  HHHHHHHTTEEEE  SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHHHT  HHHHHTTHHHHHHHHHHH:    
ExpBur          :ebbebeeeebeeeeeeeeebbebeeebbeeeeeebeeeebbebbbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeeb:    

queryA       913:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1012
                :****************************************************************************************************:
8aja_A_1     883:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS: 982
SecStr          :HHHHHHHHHH SGGGHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebeeebeeeeeebeebbebbeebbebbbebbeebeeeeebebbebebbeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbe:    

queryA      1013:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI:1112
                :****************************************************************** ************ ************ *******:
8aja_A_1     983:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVI:1082
SecStr          :HHTSS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SS EEEE TTS   B  BTTTEEEEEETTSST:    
ExpBur          :ebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebbebbbeeeebbbbeebbbbbeeeebbbbbeebbbeeebbeeebeeeeebeeee:    

queryA      1113:GIINNTVYDPLQPELD:1128
                :****************:
8aja_A_1    1083:GIINNTVYDPLQPELD:1098
SecStr          :T EE   B TTGGG  :    
ExpBur          :eeeeeebeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123