Protein Model on 8aja_A_1_B_1
(TEMPLATE: 
8aja
)Protein Model on 8aja_A_1_B_1
(TEMPLATE: 8aja
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1090 aa] | Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4 | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [1090 aa] | Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4 | 54L 56Q 301Q 342R 368G 369V 370S 372T(S) 373K 377L 383Y 390K(R) 392D(S) 395R 400G 402T 403G 404V 407D 408Y 442Y(S) 444R 447K 450P 451F 452E 453R 455I(L) 456S 489I 490G(E) 502E 503L 504L 505N 531G 533T(K) 534G 535T 542S 543K 546Q 548F 549Q 552G 553R 554D 555V(A) 556S 557D 558F 560D 572D 574S 575P 576C 577S 578F 599Q 600D 605D 608T 609A 632Q 633A 651P 653G 654A 655G 656I 657C 679M 681L 682G 683A 685S(N) 687I 688A 689Y 690S(A) 691N 692N 693T(S) 694I 695A 697P 939Q 943T 947Q 950S 951N 952F 967D 984Q 985S 988T 991T 992Q 995I 999E 1021R 1022V 1023D 1027K 1028G 1029Y 1054E 1056N 1059T 1060A 1061P 1071F 1072P 1076V 1089R 1090N 1103F 1105S(A) 1110V 1111V 1112I (identity: 90.1 %/82.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8aja_A_1 identity=82.6% |
queryA 19:CTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINH------TFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQ: 112
:* * ** * ** ******* ***** * **** **** **** * * ** ** ************* *** **** * **:
8aja_A_1 2:CGTISNKTPPNMNQFSSSRRGVYYPDDIFRSDVLHLTQDYFLPFNSNVTRYLSLNADSNRIVRFDNPILPFGDGIYFAATEKSNVIRGWIFGSTLDNTSQ: 101
SecStr : SSB EEEESSTTEE SS SEEEEEEEEE TTEEEEEEEEEEEGGGTEEEE EE S EEEEEEESS EEEEEEESS STTS :
ExpBur :ebebeeeeeeeeeeeebbebbbbbbeeeebbeeeeebeeebbbbebebbbbbbeebeeeeebbbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeeee:
Contact : b b
queryA 113:SVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSG: 212
:* ** **** * *** *** * * ** * * ** *** ** * * ****** ************* **** ** * *** * ****:
8aja_A_1 102:SAIIVNNSTHIIIKVCNFQLCDDPMFTVSR--GQHYKTWVYTNARNCTYEYVSKSFQLDVSEKNGNFKHLREFVFKNVDGFLHVYSAYEPIDLARGLPSG: 199
SecStr :EEEEEEETTEEEEEEE EEEEEEEEEEET--TEEEEEEEEEE S EEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS :
ExpBur :bbbbbebbeeebbbbbbbebbebbbbbbbe--eeeeeebbeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebbbbbeeeebeeeebbbee:
queryA 213:FNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGD: 312
:* **** ********* ** * *** * **************** ************* ** **** *** *********** * :
8aja_A_1 200:FSVLKPILKLPLGINITSFRVVMTMFSPTTSNWLAESAAYFVGYLKPTTFMLKFNENGTITDAVDCSQDPLSELKCTLKSFNVEKGIYQTSNFRVSPTQE: 299
SecStr : EEEEEEEE EEEEEEEEEESSSSS B EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEE S E:
ExpBur :ebebeeebebebebebebbbbbbbbbbeeeeebebbebbbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbbeeeee:
Contact : b
queryA 313:VVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 412
:************* ***** ********* *** ***** ****** ********** ** **** **** * *** ***************:
8aja_A_1 300:VVRFPNITNLCPFDKVFNATRFPSVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGQTGVIADYNYKL: 399
SecStr :EEE B HHHHHS S BGGG EEEEE SEE GGGGTTT SEEEEESS GGGGGG EESEEEEEEEEEEGGGGGGSSTT SHHHHHT :
ExpBur :bbbbbeeeeebebeebbeeeebbbbbbbeeeebeebbbbbeebeeeeeeebeebeebeeeebebbbbbbbebbbbbbbbebbebbbeeeebebbbebbeb:
Contact : b bbb bb b b b b b b bbb bb
queryA 413:PDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCG: 512
:**** *** **** ** ** ** * ** ***** ** * * * * * ** ******************:
8aja_A_1 400:PDDFTGCVIAWNTAKQDAG-----NYYYRSHRKTKLKPFERDLSN------------SDENGVRTLSTYDFNPNVPIEYQATRVVVLSFELLNAPATVCG: 482
SecStr : TT EEEEEEE TTT E-----EEEEE SS TT ------------B TTS B EEEEEE TTS GGGSEEEEEEEEEE SS EE :
ExpBur :eeebebbbbbbebbeebee-----ebebbeeeeeebeeeeebeee------------eeeeeeeebeebebeeebeeeebbbbbbbbbbeeeebebbbbb:
Contact : b b b bbbb bb bb bbbb
queryA 513:PKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA: 612
:***** * ************ ****** ****** ******* ********** * ************************************** *****:
8aja_A_1 483:PKLSTQLVKNQCVNFNFNGLKGTGVLTDSSKRFQSFQQFGRDASDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIHA: 582
SecStr : TTSEEEEEETTEEEEEEEEE TT EEE TT EEEEE TTT EEEEE TT S EEEEES TTT S EEEETT TTTHHHHTTT:
ExpBur :eeeeeeeeeeebbebbbbbeeeebbbeeeeeebeeebbbbeeeeeebebbbbbeeeebbebeebeeeebbbbbbbbeebeebbbbbeebebeebeeebbb:
Contact : b bbb bb b bb bbbbbbb b b bbbbb bb b bb
queryA 613:DQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVS: 712
:******** **** **************** ****************** ************* **** ** ********** ********:
8aja_A_1 583:DQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVS: 682
SecStr :TTS HHHHGGGSSSSEEEETTEEEESSEE SS B SEEEETTEEEEEE -------- EEEEEEB S TTEEEEEEEEEEEEEEEEEE :
ExpBur :ebbeeebeebbeeeeebebebbbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbb:
Contact : bb b bbbbb b bbb b bbbbbbbbb b
queryA 713:MAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAD: 812
:******** ******* ** ***************** *** *** ** ************* * ************* ********************:
8aja_A_1 683:MAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLAD: 782
SecStr : EEEE HHHHHH S HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHS S S EETTEEGGGTSB TTSSS BHHHHHHHHHS TT:
ExpBur :bbbbbbebeebbbeebeebbebbeeeeeebeebeebbeebbebbbebbeebbbebeeeeeebeebebeebebeebbbeeeeeeebbebbbbbbeebeeee:
queryA 813:AGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 912
:************** ********************** **************************************************************:
8aja_A_1 783:AGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 882
SecStr : S TTTTS GGG HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHHT HHHHHTTHHHHHHHHHHH:
ExpBur :ebbebeeeebeeeeeeeeebbebeeebbeeeeeebeeeebbebbbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeeb:
queryA 913:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1012
:****************************************************************************************************:
8aja_A_1 883:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS: 982
SecStr :HHHHHHHHHH SGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:
ExpBur :beebeeebeeeeeebeebbebbeebbebbbebbeebeeeeebebbebebbeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbe:
Contact : b b b bbb b bb b bb b b
queryA 1013:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI:1112
:****************************************************************** ************ ************ *******:
8aja_A_1 983:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVI:1082
SecStr :HHTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SS EEEE TTS B BTTTEEEEEETTSST:
ExpBur :ebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebbebbbeeeebbbbeebbbbbeeeebbbbbeebbbeeebbeeebeeeeebeeee:
Contact : bbb bbb b b bbb bb b bb b b bbb
queryA 1113:GIINNTVYDPLQPELD:1128
:****************:
8aja_A_1 1083:GIINNTVYDPLQPELD:1098
SecStr :T EE B TTGGG :
ExpBur :eeeeeebeeeeeeeee:
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[assembly_id:1]
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