Protein Model on 7ke8_B_1_SA_1 (TEMPLATE: 7ke8 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) B 1 (B) polymer(polypeptide(L)) [984 aa] Spike glycoprotein :SPIKE_SARS2
2 b SA 1 (C) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 455I (identity: 100.0 %/71.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7ke8_B_1 identity=71.8%
queryA        35:SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTF-------GNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRA: 127
                :*  *******  ***  *  ******** **** ** *            *** ** ** *** *****  *** ** *   * **  * ** *****  :
7ke8_B_1      31:SFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKV: 130
SecStr          : TT   B SSS    SEEEEEEEEE  TT EEEEEES  ----------    EE TTEEEEEEEESS  EEEEEEESS BSSS  EEEEE SS EEEE :    
ExpBur          :bebbbbbebeeeeeeeeeeebeebbbbbeeebbebebee----------eeeebebeebbbbbbbbeeebbbbbbbbbebeeeeebbbbbeeeeeebbeb:    

queryA       128:CNFELCDNPFFAVSKPMGTQTHTMIFDNAF----NCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLP: 223
                :* *  *  **  *                     ****** *             ** ******** **    *    **  ***** **  * *   **:
7ke8_B_1     131:CEFQFCNDPFLGVXXXXXXXXXXXXXXXXXXXXXNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLP: 230
SecStr          :   B  SS  EE ---------------------   SEEE -------------  EEEEEEEEEETTEEEEEEEEEE   SSSS SS   BEEEEEE :    
ExpBur          :beeebeeebeeee---------------------eeeeeeee-------------eeebbbbbbbeeeeebebbbeeeebeeeebbbeebebbeeebebe:    

queryA       224:LGINITNFRAILT------AFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
                : ***** *   *                    *** **** * ** *** ***********   ** * **  ***   *********** *    ****:
7ke8_B_1     231:IGINITRFQTLLALHXXXXXXXXXXXXXXXXXAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFP: 330
SecStr          :     SEEEEEEEE ----------------- EEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHT SS  SEEEEEEEEE   SEEEEE  :    
ExpBur          :bebebeebbbbbbee-----------------ebbbbbebeebebbbebeeebebeebbbbeeeebbebbbeeeebebeebeeebeebeeeeeeebbbbb:    

queryA       318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
                :*************** * ***** ** **************  ********** ******** ********  ** ********** ************ :
7ke8_B_1     331:NITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFT: 430
SecStr          :    B THHHHHH S   BTTS EEEEE SEE  THHHHT TT SEEEEESS GGGGGSS BS EEEEEEEEEGGGGGG SSS  STTTTTT    TT  :    
ExpBur          :eeeeebebeebbeeeebbbbeebeeeebeebbbebeebeeeeebeebebeebeeeebbeebbbbbebbbbbbbbebbebbbeeeeeebbeebbbbbeebe:    

queryA       418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNC-YWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLS: 516
                :*** ***  * *    ***** **        ******                    * **  ***  *   *************** ********* *:
7ke8_B_1     431:GCVIAWNSNNLDSKXXGNYNYLYRXXXXXXXKPFERDIXXXXXXXXXXXXXXXXXXXXYFPLQSYGFQPTNXVGYQPYRVVVLSFELLHAPATVCGPKKS: 530
SecStr          :EEEEEEE TTTT  -- B   EE ------- TT    --------------------    EE  B TT - TTSEEEEEEEEE   SS   EE S   :    
ExpBur          :bbbbbbebbeebbe--ebeebbbb-------eeeeeee--------------------eeeeeebebeeee-eeebbebbbbbbbeeeeeebbbbbeeee:    
Contact         :                                     b                                                              

queryA       517:TDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLT: 616
                :* * ** **************** * * * ********  * ** **** * ***** *************** *  ****** **** *  **      :
7ke8_B_1     531:TNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIXXXXXX: 630
SecStr          :     SSEEEEEETTEE  EEEEE      TT  EEE TTSSEEEEE SSS  EEEEE   EEEEEEEE  TTT S  EEEEES  GGG ----------:    
ExpBur          :eebbeeebbebbbbbeeeebebeeeeeebeeeebbbeeeeeebebbbbbeeeebbbbeebeebbbbbbbbbbeebeebbbbeeebeeeee----------:    

queryA       617:PAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTS----QKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVS: 712
                :  ** **** ***** **********  **************** *              ** ********  * ***** ******* ** ***  ***:
7ke8_B_1     631:XXWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVS: 730
SecStr          :---------- EEEETTEEEESSEE SS    SEEEETTEEEEEE ------------  EEEEEE            TTEEEEES EEEEEEEEEEE  :    
ExpBur          :----------eebebeebbbeebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbb:    

queryA       713:MAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAD: 812
                :* ****** ********** ***************** *** *** ** ******** ****  * ************* ** **************   :
7ke8_B_1     731:MTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTXXX: 830
SecStr          :   EEE HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH   SS     SS  STT  GGGTSB TTSSS  BHHHHHHHHH  ---:    
ExpBur          :bbbbbbebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbbebeeebeeeeeeebeebebeebbeeeeeeeebbebbbbbbeebe---:    

queryA       813:AGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 912
                :                       ************** *** ** **  ** * ************************************* ****** *:
7ke8_B_1     831:XXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA: 930
SecStr          :-----------------------  SSEEE   SS HHHHHHHHHHHHHHHHHHTTGGGTSS     HHHHHHHHHHHTT  THHHHTTHHHHHHHHHHH:    
ExpBur          :-----------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeebebbebbbebbeebebeeebbeeeeeebbeebeeb:    

queryA       913:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1012
                :*  ** **  *  ***************************************************************************************:
7ke8_B_1     931:IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1030
SecStr          :HHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG  TTSS SSHHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebeeeeeebeebbebbeebeebbeebeeebeeeeebebbebeebbeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbe:    

queryA      1013:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI:1112
                :************************ ************** ** ********** *** ******** *** ** *****  *******************:
7ke8_B_1    1031:ECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI:1130
SecStr          :HHTSS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEE  EEEEEEES EESSS EEEESSSEEEESSSSEEEE TTS   EE BTTTEEE S GGGST:    
ExpBur          :ebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbbeeeeeebebbebbbeeeebbeeeebebbbeeeebbbbbebbebeeebbeebbeeeeebeeee:    

queryA      1113:GIINNTVYDPLQPELDS:1129
                :** **************:
7ke8_B_1    1131:GIVNNTVYDPLQPELDS:1147
SecStr          :T EE   B TTHHHHH :    
ExpBur          :eeeeeebeeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123