Protein Model on 7ke8_B_1_A_1
(TEMPLATE: 
7ke8
)Protein Model on 7ke8_B_1_A_1
(TEMPLATE: 7ke8
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [984 aa] | Spike glycoprotein :SPIKE_SARS2 | |
| 2 | b | A 1 (A) | polymer(polypeptide(L)) [981 aa] | Spike glycoprotein :SPIKE_SARS2 | 42Y 45E(K) 46I(V) 47F 51T(V) 112Q 191D 192G 193F(Y) 217K(E) 218P 223P 225G 356Y 357N 372T 400G 719D 722M 727D 737Q 738Y 739G 740S 741F 744Q 747R 768K 769Q 770M(I) 771Y 772K 774P 778Y(D) 779F 836K 837F 838N 839G 843L 844P 845P 846L 848T 851M 854A(Q) 855Y 865T 868W 871G 872A 874A 876L 877Q 878I 879P 880F 882M 886Y 889N 894T 895Q 896N 899Y 900E 902Q 945V 946K 948L 949S 957S 958V 960N 964S 965R 966L 967D 970E 987Q 991T 994L 995I 1001R 1009T 1012S 1013E 1016L 1017G 1021R 1093S(E) 1123L 1126E 1129S (identity: 90.3 %/71.8 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7ke8_B_1 identity=71.8% |
queryA 35:SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTF-------GNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRA: 127
:* ******* *** * ******** **** ** * *** ** ** *** ***** *** ** * * ** * ** ***** :
7ke8_B_1 31:SFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKV: 130
SecStr : TT B SSS SEEEEEEEEE TT EEEEEES ---------- EE TTEEEEEEEESS EEEEEEESS BSSS EEEEE SS EEEE :
ExpBur :bebbbbbebeeeeeeeeeeebeebbbbbeeebbebebee----------eeeebebeebbbbbbbbeeebbbbbbbbbebeeeeebbbbbeeeeeebbeb:
Contact : b bbb b b
queryA 128:CNFELCDNPFFAVSKPMGTQTHTMIFDNAF----NCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLP: 223
:* * * ** * ****** * ** ******** ** * ** ***** ** * * **:
7ke8_B_1 131:CEFQFCNDPFLGVXXXXXXXXXXXXXXXXXXXXXNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLP: 230
SecStr : B SS EE --------------------- SEEE ------------- EEEEEEEEEETTEEEEEEEEEE SSSS SS BEEEEEE :
ExpBur :beeebeeebeeee---------------------eeeeeeee-------------eeebbbbbbbeeeeebebbbeeeebeeeebbbeebebbeeebebe:
Contact : bbb bb b
queryA 224:LGINITNFRAILT------AFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
: ***** * * *** **** * ** *** *********** ** * ** *** *********** * ****:
7ke8_B_1 231:IGINITRFQTLLALHXXXXXXXXXXXXXXXXXAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFP: 330
SecStr : SEEEEEEEE ----------------- EEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHT SS SEEEEEEEEE SEEEEE :
ExpBur :bebebeebbbbbbee-----------------ebbbbbebeebebbbebeeebebeebbbbeeeebbebbbeeeebebeebeeebeebeeeeeeebbbbb:
Contact : b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:*************** * ***** ** ************** ********** ******** ******** ** ********** ************ :
7ke8_B_1 331:NITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFT: 430
SecStr : B THHHHHH S BTTS EEEEE SEE THHHHT TT SEEEEESS GGGGGSS BS EEEEEEEEEGGGGGG SSS STTTTTT TT :
ExpBur :eeeeebebeebbeeeebbbbeebeeeebeebbbebeebeeeeebeebebeebeeeebbeebbbbbebbbbbbbbebbebbbeeeeeebbeebbbbbeebe:
Contact : bb b b
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNC-YWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLS: 516
:*** *** * * ***** ** ****** * ** *** * *************** ********* *:
7ke8_B_1 431:GCVIAWNSNNLDSKXXGNYNYLYRXXXXXXXKPFERDIXXXXXXXXXXXXXXXXXXXXYFPLQSYGFQPTNXVGYQPYRVVVLSFELLHAPATVCGPKKS: 530
SecStr :EEEEEEE TTTT -- B EE ------- TT -------------------- EE B TT - TTSEEEEEEEEE SS EE S :
ExpBur :bbbbbbebbeebbe--ebeebbbb-------eeeeeee--------------------eeeeeebebeeee-eeebbebbbbbbbeeeeeebbbbbeeee:
queryA 517:TDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLT: 616
:* * ** **************** * * * ******** * ** **** * ***** *************** * ****** **** * ** :
7ke8_B_1 531:TNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIXXXXXX: 630
SecStr : SSEEEEEETTEE EEEEE TT EEE TTSSEEEEE SSS EEEEE EEEEEEEE TTT S EEEEES GGG ----------:
ExpBur :eebbeeebbebbbbbeeeebebeeeeeebeeeebbbeeeeeebebbbbbeeeebbbbeebeebbbbbbbbbbeebeebbbbeeebeeeee----------:
queryA 617:PAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTS----QKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVS: 712
: ** **** ***** ********** **************** * ** ******** * ***** ******* ** *** ***:
7ke8_B_1 631:XXWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVS: 730
SecStr :---------- EEEETTEEEESSEE SS SEEEETTEEEEEE ------------ EEEEEE TTEEEEES EEEEEEEEEEE :
ExpBur :----------eebebeebbbeebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbb:
queryA 713:MAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAD: 812
:* ****** ********** ***************** *** *** ** ******** **** * ************* ** ************** :
7ke8_B_1 731:MTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTXXX: 830
SecStr : EEE HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS STT GGGTSB TTSSS BHHHHHHHHH ---:
ExpBur :bbbbbbebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbbebeeebeeeeeeebeebebeebbeeeeeeeebbebbbbbbeebe---:
Contact : b b b bbbbb b b bbbbb b bb
queryA 813:AGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 912
: ************** *** ** ** ** * ************************************* ****** *:
7ke8_B_1 831:XXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA: 930
SecStr :----------------------- SSEEE SS HHHHHHHHHHHHHHHHHHTTGGGTSS HHHHHHHHHHHTT THHHHTTHHHHHHHHHHH:
ExpBur :-----------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeebebbebbbebbeebebeeebbeeeeeebbeebeeb:
Contact : bbbb bbbb b b bb b b bb b bbbbb b b b bbb bb b
queryA 913:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1012
:* ** ** * ***************************************************************************************:
7ke8_B_1 931:IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1030
SecStr :HHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG TTSS SSHHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:
ExpBur :beebbeebeeeeeebeebbebbeebeebbeebeeebeeeeebebbebeebbeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbe:
Contact : bb bb bb b bbbb b b b bb b b b
queryA 1013:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI:1112
:************************ ************** ** ********** *** ******** *** ** ***** *******************:
7ke8_B_1 1031:ECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI:1130
SecStr :HHTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EESSS EEEESSSEEEESSSSEEEE TTS EE BTTTEEE S GGGST:
ExpBur :ebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbbeeeeeebebbebbbeeeebbeeeebebbbeeeebbbbbebbebeeebbeebbeeeeebeeee:
Contact :b bb b b
queryA 1113:GIINNTVYDPLQPELDS:1129
:** **************:
7ke8_B_1 1131:GIVNNTVYDPLQPELDS:1147
SecStr :T EE B TTHHHHH :
ExpBur :eeeeeebeeeeeeeeee:
Contact : b b b
|
[assembly_id:1]
[help]