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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1054 aa] | Spike glycoprotein | |
2 | b | C 1 (C) | polymer(polypeptide(L)) [1052 aa] | Spike glycoprotein | 45E 46I 47F 48R 110K 112Q 160T 191D 192G 193F 218P 221K 223P 224L 225G 226I 227N 268E 269N 270G 271T 719D 722M 727D 737Q 738Y 739G 740S 741F 744Q 746N 747R 750S 768K 769Q 770M 771Y 772K 779F 830D 831L 833C 835Q 836K 837F 839G 844P 845P 846L 847L 848T 851M 855Y 865T 866A 869T 871G 872A 876L 877Q 878I 879P 880F 882M 886Y 889N 894T 895Q 896N 899Y 945V 948L 949S 957S 958V 960N 961D 963L 964S 965R 966L 967D 970E 976D 987Q 991T 994L 1001R 1012S 1013E 1016L 1017G 1021R (identity: 100.0 %/96.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5x58_A_1 identity=96.8% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :*********************************************************** ****************************************: 5x58_A_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : S B EEE EEEEE SS S EEEEEEEE TT EEEEEEE SSB EE TT EEEEEEESS EEEESSSSSSS EEEEE: ExpBur :eeeebeeeeeeeeeebebbebbbbebeeeebeeeeeebebbbbbbebebbbbebeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb: Contact : bbbb b b queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 5x58_A_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SSEEEEEEEEE S BEEE TTT EEEE S S EEEEEEEEEEEE S SS EEEEEEEEEETTEEEEEEEE SSS EEEEE: ExpBur :beeebbebbbbbbebbebbbbebeeeebeeeeeebeeeeeeeebeeebeeeebebeeeeeebeebbbbbbbeeeeebebbebeeebebeeebbeebbbbe: Contact : b bbb queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :********************** *************************************************************************: 5x58_A_1 205:PIFKLPLGINITNFRAILTAFSXXXXTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE EEEE B B ---- SEEEEEEE EEEEEEEE SSS EEEETTSSHHHHHHHHHT SS SEE B EEE : ExpBur :eeeebebebebeebbbbbbbbe----ebbbbebbbbbbebeebebbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbebeeebebbeb: Contact :b b bbbbb bbbb queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 5x58_A_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :SS EE GGGTTTT S STT EEEEE SEE STTTSS SEEEESSS SSTTTTS BS EEEEEEEE HHHHHHSSBS TTSSSTTTS B SSS : ExpBur :eeeeeebbeebbeeeebebbbebeeeebeebbbebeebeeeeebeeeeebeeebeebeeebbbebebbbbbbbeebbebbbeeeeeeebbebbebbeeee: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************************************************: 5x58_A_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 504 SecStr : EEEEEE TTTT SS S B SS TT B SSS TTSTT B SB TTS GGGS EEEEEEE S SS B : ExpBur :bbbbbbebeeebbeeebbeebebbeeeeeebeeeeeeeeeeebbeeeeebeeeeeebeebbeebebebeeeeeebbbbbbbbbbeeeeeebbbbbeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 5x58_A_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SSEEE SS BEEEE TT EEESSSSSEEEEE TTT EEEEE B EEE TTT EEEE S SHHHHHHHTTT SS: ExpBur :eeeeebbbebbbbebeeebbbeebeeebeeeebbbeeeeeebebbbbbeeeeebebeebbeeebbbbbbbbeebeeebbbbbebebeebeebeeeebbeb: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************* **********************************************: 5x58_A_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS S TT EESS EE S SEEEETTEEEE --------- EEEE S SSEEEEES B EEEEEEE B : ExpBur :ebeebeeeeeebeeeebbbbebeebeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbbbbb: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 5x58_A_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr : HHHHHHSS SHHHHHHGGG SSSSSHHHHHHHHHHHHHHHHHHHHTT SS S BTTB S SSS SSSS HHHHHHHHS --------: ExpBur :bebeebbbeebeebeebbeeeeeebeebeebbeebbebbbebbeebbeebeeeeeebeebebebbebebbbeeeebeeebbebbebbbeebe--------: Contact : b b b bbbbb b bb b bbbbb b queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 : ****************************************************************************************: 5x58_A_1 805:XXXXXXXXXXXXDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr :------------ TT B SS HHHHHHHHHHHHHHHHHT SHHHHSS HHHHHHHHHHHHT THHHHHSHHHHHHHHHHHHHHHH: ExpBur :------------eeeeeeeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbebbbebbeebe: Contact : bb b bbb b bbbbb b b bb b bb bbbbb b b b bbb b queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :****************************************************************************************************: 5x58_A_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHHS SHHHHHHHHHHHHHHHHHHHHHTSS TTSS S HHHHHTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS: ExpBur :eebeeeeebeeebbebeeebeebbeebeeebeeeeebeeeebeebeeebeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbe: Contact : b bb bb bb bbbbb b b b b b b bb bb queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFV:1104 :***************************************************************************************: 5x58_A_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFV:1091 SecStr : STTTS SSSEEE EEEETTEEEEEEEE B EEEEEE SSB SSS BEESS EEETTEEEB TTS B STTEE : ExpBur :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebeebeeeeeebeeeeebbbbeeeeeebbbbebbebeeeeeeeebee: Contact : b |