Protein Model on 8bo7_A_1_B_1 (TEMPLATE: 8bo7 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) A 1 (AAA) polymer(polypeptide(L)) [236 aa] Coagulation factor XIa light chain :FA11_HUMAN
2 b B 1 (AAA) non-polymer(QW6) 4-[[(2~{S})-2-[4-(5-chloranyl-2-cyano-phenyl)-3-methoxy-6-oxidanylidene-2,5-dihydropyridin-1-yl]-3-[(2~{S})-oxan-2-yl]propanoyl]amino]benzoic acid 278V(R) 280V(L) 296H 297C 386A(Y) 393T(I) 435D 436S(A) 437C 438Q(K) 439G 440D 441S 459T 461W 462G 464G 465C 472G 473V 474Y (identity: 71.4 %/43.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8bo7_A_1 identity=43.9%
queryA       256:IVGGESALPGAWPWQVSLHVQN---VHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFM-----FYGAGYQVEKVISHPNYDSKTKNNDIA: 347
                :****     * ***** **       * ******   ** *****       *       *** **       * *    *   * *  *       ***:
8bo7_A_1       1:IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCF-YGVESPKILRVYSGILNQSEIKEDTSFFG----VQEIIIHDQYKMAESGYDIA:  95
SecStr          : BS EE  TTSSTTEEEEEE SSS EEEEEEEEEETTEEEE GGGG-TT   GGGEEEE S SBGGG  TT   EE----EEEEEE TT S GGGS   E:    
ExpBur          :bbeeeebeeeebbbbbbbbbeeeeeebebbbbbbbeebbbbbbebb-eebeeeeebebbbebbebeebeeeeeebe----beeebebeeeeebeebebbb:    
Contact         :                         b b               bb                                                       

queryA       348:LMKLQKPLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVT: 447
                :* **       *   *  **  *        **  ***      *    *  **  *     *  **     **  *****   *  * * *******  :
8bo7_A_1      96:LLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY-RGHKITHKMICAGYREGGKDACKGDSGGPLSC: 194
SecStr          :EEEESS    BTTB   B S TT TT     EEEEES  SSSS    SB EEEE  EE HHHHHHH -TTS   TTEEEE  TT   B  TT TTSEEEE:    
ExpBur          :bbebeeebeeeeebeebebbeeeeeeeebebbebbbbbeeeeeeeebeebbbbebeebeeeebeeeb-eeeebeeebbbbbeeebeebbbeebebbbbbb:    
Contact         :                                      b      b                                         bbbbbbb      

queryA       448:SKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMR: 489
                :  *  * * * **** ***   ***** **    ***     :
8bo7_A_1     195:KHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ: 236
SecStr          :EETTEEEEEEEEEE SSSS TT  EEEEEGGGGHHHHHHHH :    
ExpBur          :eeeeeebbbbbbbbeeebbeebebbbbbbbeebbebbeeeee:    
Contact         :           b bb bb      bbb                                                                         


Input Residue Numbers for Focused Sites

ex) 2,15,123