Protein Model on 5k0h_A_1_E_1 (TEMPLATE: 5k0h )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) A 1 (A) polymer(polypeptide(L)) [234 aa] Coagulation factor X :FA10_HUMAN
2 b E 1 (A) non-polymer(6PK) O-benzyl-N-(benzylsulfonyl)-D-seryl-N-[(4-carbamimidoylphenyl)methyl]glycinamide 296H 340K(E) 341T 342K(Y) 386A(R) 389E 416Y(F) 435D 436S(A) 437C 438Q 441S 459T(V) 460S 461W 462G 463S(E) 464G 465C 472G (identity: 65.0 %/38.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5k0h_A_1 identity=38.2%
queryA       256:IVGGESALPGAWPWQVSL-HVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYG--AGYQVEKVISHPNYDSKTKNNDIALMKLQ: 352
                :****     *  ***  *    *   *** *     * *****    *          *  *      *  *   ** ** *      *   ***   * :
5k0h_A_1       1:IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHC----LYQAKRFKVRVGD-RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLK:  95
SecStr          : BSSEE  TTTSTTEEEEE TTS EEEEEEE SSSEEEE GGG----TTS SS EEEES -SBTTS  S  EEE EEEEEE TT BTTTTBT  EEEEES:    
ExpBur          :bbebeebeeeebbbbbbbbbeeeeebbbbbbbeeebbbbbbbb----beebeebebbbbb-ebeeeeeebbeebebeeeeebeebeeeeebebbbbbebe:    
Contact         :                                         b                                             bbb          

queryA       353:KPLTFNDLVKPVCLPNPG---MMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSK: 449
                : * **   * * ***        *        ** * * ***  *  *    *       *         **  * ***      * ******** **  :
5k0h_A_1      96:TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRF: 193
SecStr          :S    BTTB   B   HHHHHHHTTTSSEEEEEES BSSSSS B SB EEEEEEB  HHHHHHH SS--   TTEEEES SSSS B  TT TT EEEEEE:    
ExpBur          :eebeeeebbeebeebeeeebeeebbeeeebbbbbbbeeeeeeeebeebbbbebebbeeeebeeebee--ebbebbbbbbeeeeebbbbebbbbbbbbbee:    
Contact         :                                    b  b                          b                  bbbb  b        

queryA       450:NNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRA: 490
                :       *  *** ***     * *  *  *  ** * *  :
5k0h_A_1     194:KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKT: 234
SecStr          :TTEEEEEEEEEE SSSS TT  EEEEEGGGGHHHHHHHHH :    
ExpBur          :eeeebbbbbbbbebebbeeebbbbbbebbebbebbeebbee:    
Contact         :         bbbbbbb      b                                                                             


Input Residue Numbers for Focused Sites

ex) 2,15,123