[pdbjlvh2]Protein Model on 5jyi_A_1_D

Protein Model on 5jyi_A_1_D_1 (TEMPLATE: 5jyi )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TMPS2_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [220 aa]	Cationic trypsin :TRY1_BOVIN
2	b		D 1 (A)	non-polymer(NA)	SODIUM ION	264P(A) 265G(N) 308W(E) 309T(D) 397L (identity: 20.0 %/40.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5jyi_A_1 identity=40.5%

queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPL: 355
                :****        * ****     * **** *   * * ****                       *  *     * * ** * * * **** * **    :
5jyi_A_1      24:IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNI-NVVEGNEQFISA----SKSIVHPSYNSNTLNNDIMLIKLKSAA: 117
SecStr          :  S EE  TTSSTTEEEEE-SSSEEEEEEEEETTEEEE GGG  SS EEEES SBT-TS  S  EEEEE----EEEEE TT  TTT TT  EEEEESS  :    
ExpBur          :bbeeeebeebebebbbbbb-eeebbbbbbbbeeebbbbbbebeeeebebebbbeeb-eeeeeebbebee----eeeeebeeeeeeebebbbbbbbbeeeb:    
Contact         :        bb                                          bb                                              

queryA       356:TFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKT-SEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNIWW: 454
                :  *  *    **           * ***** *         **   *        * *   *   **  * *** * *  ********** * *      :
5jyi_A_1     118:SLNSRVASISLPTSCASAGTQ--CLISGWGNTKXXXTSYPDVLKCLKAPILSDSSCKS--AYPGQITSNMFCAGYLEGGXDSCQGDSGGPVVCSGK----: 209
SecStr          :  SSSS   B  SS   TT E--EEEEES    ---  S SB EEEEEEB  HHHHHH--HSTTT  TTEEEES SS  -   TTTTT EEEETTE----:    
ExpBur          :eeeeebeebebbeeeeeeebe--bebbbbbbee---eeeeeebbbbebebbeeeebee--bbeeebeeebbbbbeeeee-bbbebbbbbbbbbeeb----:    
Contact         :                                          b                                                         

queryA       455:LIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
                :* *  *******    ****  *     **       :
5jyi_A_1     210:LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN: 246
SecStr          :EEEEEEE SSSS TT  EEEEEGGG HHHHHHHHHH :    
ExpBur          :bbbbbbbeeebbeeeebbbbbebbebeebbeebbeee:

Protein Model on 5jyi_A_1_D_1 (TEMPLATE: 5jyi )

Input Residue Numbers for Focused Sites