Protein Model on 3upe_A_1_C_1
(TEMPLATE: 
3upe
)Protein Model on 3upe_A_1_C_1
(TEMPLATE: 3upe
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TMPS2_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [223 aa] | Cationic trypsin :TRY1_BOVIN | |
| 2 | b | C 1 (A) | non-polymer(0CA) | 1-[(7-carbamimidoylnaphthalen-2-yl)methyl]-6-({1-[(1Z)-ethanimidoyl]piperidin-4-yl}oxy)-2-(propan-2-yl)-1H-indole-4-carboxylic acid | 340K(E) 342K(Y) 416Y(F) 435D 436S(A) 437C 438Q 441S 459T(V) 461W 462G 463S 464G 465C 472G (identity: 66.7 %/39.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3upe_A_1 identity=39.2% |
queryA 256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPL: 355
:**** * **** * **** * * * **** * * * * ** * * * **** * ** :
3upe_A_1 1:IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNI-NVVEGNEQFISA----SKSIVHPSYNSETYNNDIMLIKLKSAA: 94
SecStr : BS EE TTSSTTEEEEE-SSSEEEEEEEEETTEEEE GGG SS EEEES SST-TS S EEEEE----EEEEE TT TTT TT EEEEESS :
ExpBur :bbeeeebeebebebbbbbb-eeebbbbbbbbeeebbbbbbebeeeebebbbbbbbb-eeeeeebeebeb----eeeeebeeeeeebeebbbbbbebeeeb:
Contact : b b
queryA 356:TFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTS-EVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNIWW: 454
: * * ** * ***** * * ** * * * ** * *** * * * ******** * * :
3upe_A_1 95:SLNSRVASISLPTSCASAGTQ--CLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDSGGPVVCSGK----: 186
SecStr : SSSS B SS TT E--EEEEES SSS SS EEEEEEB HHHHHHH SS-- TTEEEES TTSS B TT TT EEEETTE----:
ExpBur :eeeeebeebebbeeeeeeeee--bbbbbbbbeeeeeeeebeebebbebbbbeeeebeeeeee--ebeebbbbbbbeebeebbbebbbbbbbbbeee----:
Contact : b bbbb b
queryA 455:LIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
:* * ******* ** * ** :
3upe_A_1 187:LQGIVSWGSGCAQKNKPGFYTKLCNYVSWIKQTIASN: 223
SecStr :EEEEEEE SSSSBTTB EEEEEGGGGHHHHHHHHHT :
ExpBur :bbbbbbbeeebbeeeebbbbbebbebbebbeebbeee:
Contact : b bbbbb b
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[assembly_id:1]
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