Protein Model on 3q00_A_1_F_1
(TEMPLATE: 
3q00
)Protein Model on 3q00_A_1_F_1
(TEMPLATE: 3q00
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TMPS2_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [223 aa] | Cationic trypsin :TRY1_BOVIN | |
| 2 | b | F 1 (A) | non-polymer(PEU) | 2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL | 281C 296H 298V(Y) 299E(K) (identity: 50.0 %/39.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3q00_A_1 identity=39.2% |
queryA 256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPL: 355
:**** * **** * **** * * * **** * * * * ** * * * **** * ** :
3q00_A_1 1:IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNI-NVVEGNEQFISA----SKSIVHPSYNSETYNNDIMLIKLKSAA: 94
SecStr : BS EE TTSSTTEEEEE-SSSEEEEEEEEETTEEEE GGG SS EEEES SST-TS S EEEEE----EEEEE TT TTT TT EEEEESS :
ExpBur :bbeeeebeebebebbbbbb-eeebbbbbbbbeeebbbbbbebeeeebebbbbbbbb-eeeeeebbebeb----eeeeebeeeeeeeeebbbbbbebeeeb:
Contact : b b bb
queryA 356:TFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTS-EVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNIWW: 454
: * * ** * ***** * * ** * * * ** * *** * * * ******** * * :
3q00_A_1 95:SLNSRVASISLPTSCASAGTQ--CLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDSGGPVVCSGK----: 186
SecStr : BTTB B SS TT E--EEEEESS SSS SS EEEEEEB HHHHHHT SS-- TTEEEES TBSS B TT TT EEEETTE----:
ExpBur :eeeeebeebebbeeeeeeeee--bbbbbbbbeeeeeeeebeebebbebebbeeeebeeebee--ebbebbbbbbbeebeebbbebbbbbbbbbeee----:
queryA 455:LIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
:* * *** *** ** * * ** :
3q00_A_1 187:LQGIVSWGEGCAQKNKPGIYTKVCNYVSWIKQTIASN: 223
SecStr :EEEEEEE SSSSBBTB EEEEEGGGGHHHHHHHHHH :
ExpBur :bbbbbbbeeebbeeeebbbbbebbebbebbeebbeee:
|
[assembly_id:1]
[help]