Protein Model on 2p3f_A_1_C_1 (TEMPLATE: 2p3f )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) A 1 (H) polymer(polypeptide(L)) [235 aa] Coagulation factor X :FA10_HUMAN
2 b C 1 (N) polymer(polypeptide(L)) [74 aa] Anti-coagulant protein 5 :Q16940_ANCCA 280V(F) 296H 297C 339S(K) 340K(E) 342K(Y) 386A(R) 390K 391G 392K(R) 393T(Q) 416Y(F) 435D 436S(A) 437C 438Q 439G 440D 441S 460S 461W 462G 463S(E) 464G 472G (identity: 60.0 %/38.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2p3f_A_1 identity=38.2%
queryA       256:IVGGESALPGAWPWQVSL-HVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYG--AGYQVEKVISHPNYDSKTKNNDIALMKLQ: 352
                :****     *  ***  *    *   *** *     * *****    *          *  *      *  *   ** ** *      *   ***   * :
2p3f_A_1       1:IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHC----LYQAKRFKVRVGD-RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLK:  95
SecStr          : BSSEE  TTTSTTEEEEE TTS EEEEEEEEETTEEEE GGG----G S S  EEEES -SBSS   SS EEEEEEEEEE TT  TTT TT  EEEEES:    
ExpBur          :bbeeeebeeeebbbbbbbbbeeeeeebbbbbbeeebbbbbbeb----beeeeebebbbbb-ebeeeeeeebeebebeeeeebeeeeeeeebbbbbbbebe:    
Contact         :                         b               bb                                           bb b          

queryA       353:KPLTFNDLVKPVCLPNPG---MMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSK: 449
                : * **   * * ***        *        ** * * ***  *  *    *       *         **  * ***      * ******** **  :
2p3f_A_1      96:TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRF: 193
SecStr          :S    BTTB   B   HHHHHHTTTTSSEEEEEES  SSTTS   SB EEEEEEB  HHHHHHH SS--   TTEEEES SSSS B  TT TT EEEEEE:    
ExpBur          :eebeeeebbeebeebeeeebeeebbeeebbbbbbbbeeebeeeebeebbbbebebbeeeebeebbee--ebbebbbbbbeeeeebbbbeebbbbbbbbee:    
Contact         :                                    b   bbbb                      b                  bbbbbbb        

queryA       450:NNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRA: 490
                :       *  *** ***     * *  *  *  ** * *  :
2p3f_A_1     194:KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKT: 234
SecStr          :TTEEEEEEEEEE SSSS TT  EEEEEGGGSHHHHHHHTT :    
ExpBur          :eeeebbbbbbbbebebbeeebbbbbbbbbebbebbeebeee:    
Contact         :          bbbbb       b                                                                             


Input Residue Numbers for Focused Sites

ex) 2,15,123