Protein Model on 2cji_A_1_D_1 (TEMPLATE: 2cji )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) A 1 (A) polymer(polypeptide(L)) [234 aa] ACTIVATED FACTOR XA HEAVY CHAIN :FA10_HUMAN
2 b D 1 (A) non-polymer(GSK) 6-CHLORO-N-{(3S)-1-[(1S)-1-METHYL-2-(4-MORPHOLINYL)-2-OXO ETHYL]-2-OXO-3-PYRROLIDINYL}-2-NAPHTHALENESULFONAMIDE 339S(K) 340K(E) 341T 342K(Y) 416Y(F) 435D 436S(A) 438Q 441S 459T(V) 460S 461W 462G 464G 465C 472G 473V(I) 474Y (identity: 61.1 %/38.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2cji_A_1 identity=38.2%
queryA       256:IVGGESALPGAWPWQVSL-HVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYG--AGYQVEKVISHPNYDSKTKNNDIALMKLQ: 352
                :****     *  ***  *    *   *** *     * *****    *          *  *      *  *   ** ** *      *   ***   * :
2cji_A_1       1:IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHC----LYQAKRFKVRVGD-RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLK:  95
SecStr          : BSSEE  TTSSTTEEEEE TTS EEEEEEE SSSEEEE GGG----GGS SS EEEES -SBTTS  S  EEE EEEEEE TT BTTTTBT  EEEEES:    
ExpBur          :bbeeeebeeeebbbbbbbbeeeeebbbbbbbbeeebbbbbbbb----beeeeebebbbbb-ebeeeeeebeeebebeeeeebeebeeeeebbbbbbbebe:    
Contact         :                                                                                      bbbb          

queryA       353:KPLTFNDLVKPVCLPNPG---MMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSK: 449
                : * **   * * ***        *        ** * * ***  *  *    *       *         **  * ***      * ******** **  :
2cji_A_1      96:TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRF: 193
SecStr          :S    BTTB   B   HHHHHHHTTTSSEEEEEES BSSTTS B SB EEEEEEB  HHHHHHH SS--   TTEEEES SSSS B  TT TT EEEEEE:    
ExpBur          :eebeeeebbeebeebeeeebeeebbeeeebbbbbbbeeeeeeeebeebbbbebebbeeeebeeebee--ebbebbbbbbeeeeebbbbebbbbbbbbbee:    
Contact         :                                                                  b                  bb b  b        

queryA       450:NNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRA: 490
                :       *  *** ***     * *  *  *  ** * *  :
2cji_A_1     194:KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKT: 234
SecStr          :TTEEEEEEEEEE SSSS TT  EEEEEGGGGHHHHHHHHH :    
ExpBur          :eeeebbbbbbbbebebbeeeebbbbbebbebbebbeebeee:    
Contact         :         bbbb bb      bbb                                                                           


Input Residue Numbers for Focused Sites

ex) 2,15,123