[pdbjlvh2]Protein Model on 1trm_A_1_B

Protein Model on 1trm_A_1_B_1 (TEMPLATE: 1trm )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TMPS2_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [223 aa]	TRYPSIN :TRY2_RAT
2	b		B 1 (B)	polymer(polypeptide(L)) [223 aa]	TRYPSIN :TRY2_RAT	301P(R) 323G(N) 352Q(S) 353K(S) (identity: 0.0 %/41.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1trm_A_1 identity=41.4%

queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPL: 355
                :****        * ****     * **** *   * * ****                 *     *  *     * * *** * ** ** * * **  * :
1trm_A_1       1:IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNI-NVLEGNEQFVNAA----KIIKHPNFDRKTLNNNIMLIKLSSPV:  94
SecStr          : BS EE  TT STTEEEEE-SSSEEEEEEESSSSEEEE GGG  SS EEEES SST-TS  S  EEEEEE----EEEE TT BTTTTBT  EEEEESS  :    
ExpBur          :bbeeeebeebebebbbbbb-eeebbbbbbbbeeebbbbbbebeeeebebbbbbbbb-eeeeeebbebebe----eeeebeebeeeebebbbbbbbbeeeb:    
Contact         :                                             b                     b                            bb  

queryA       356:TFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTS-EVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNIWW: 454
                :  *  *  * **           * ***** *   *      *      *     *   *     **  * * *** *  ********** *        :
1trm_A_1      95:KLNARVATVALPSSCAPAGTQ--CLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----: 186
SecStr          :  BTTB   B  SS   TT E--EEEEESS   SSS    SS EEEEEEB  HHHHHHHS--TT   TTEEEES SS S B  TTTTT EEESSSB----:    
ExpBur          :eeeeebeebeebeeebeeebe--bebbbbbbbeeeeeeebeebbbbebbbbeeeebeebb--eeebeebbbbbbbeebeebbbeebbbbbbbbeeb----:    

queryA       455:LIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
                :* *  *** ***    ****  *    ***     * :
1trm_A_1     187:LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN: 223
SecStr          :EEEEEEE SSSSBTTB EEEEEGGGGHHHHHHHHH  :    
ExpBur          :bbbbbbeeeebbeeebbbbbbebbebeebbeebbeee:

Protein Model on 1trm_A_1_B_1 (TEMPLATE: 1trm )

Input Residue Numbers for Focused Sites