Protein Model on 1slw_B_1_E_1 (TEMPLATE: 1slw )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) B 1 (B) polymer(polypeptide(L)) [215 aa] ANIONIC TRYPSIN :TRY2_RAT
2 b E 1 (B) non-polymer(NI) NICKEL (II) ION 386A(H) 394S(H) (identity: 0.0 %/40.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1slw_B_1 identity=40.5%
queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPL: 355
                :****        * ****     * **** *   * * ****                 *     *  *     * * *** * ** **** * **  * :
1slw_B_1       1:IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNI-NVLEGNEQFVNAA----KIIKHPNFDRKTLNNDIMLIKLSSPV:  94
SecStr          : BT EE  TTTSTTEEEEE-SSSEEEEEEEEETTEEEE GGG  SS EEE S SBS-SS  S   EEEEE----EEEE TT BTTTTBT  EEEEESS  :    
ExpBur          :bbeeeebeeeebebbbbbb-eeeebbbbbbbeeebbbbbbebeeeebebbbebbbb-eeeeeeeeebebe----ebeebeeeeeeeeebbbbbbbbeeeb:    

queryA       356:TFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTS-EVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNIWW: 454
                :     *    **           * ***** *          *      *     *   *     **  * * *** *  ********** *        :
1slw_B_1      95:KXXXXVATIALPSSCAPAGTQ--CLISGWGHTLXXXXNHPDLLQCLDAPLLPQADCEASY--PGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----: 186
SecStr          : ----    B  SS   TT E--EEEEESS   ----   SB EEEEEEB  HHHHHHHS--TTT  TTEEEES SS S B  TT TT EEEETTE----:    
ExpBur          :e----eeebeebeeebeeebe--bbbbbbbeee----eebeebbbbebbbbeeeebeebb--eeebeebbbbbbbeebeebbbeebbbbbbbbeee----:    
Contact         :                              b       b                                                             

queryA       455:LIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
                :* *  *** ***    ****  *    ***     * :
1slw_B_1     187:LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN: 223
SecStr          :EEEEEEE SSSS TT  EEEEEGGGGHHHHHHHHHT :    
ExpBur          :bbbbbbeeeeebeeebbbbbbebbebeebbeebbeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123