[pdbjlvh2]Protein Model on 1pfx_A_1_B

Protein Model on 1pfx_A_1_B_1 (TEMPLATE: 1pfx )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TMPS2_HUMAN)	A 1 (C)	polymer(polypeptide(L)) [235 aa]	FACTOR IXA :FA9_PIG
2	b		B 1 (L)	polymer(polypeptide(L)) [146 aa]	FACTOR IXA :FA9_PIG	264P 265G 269W 357F(L) 358N 359D(S) 360L(Y) 362K(T) 363P 364V(I) 365C 368N(D) 371M(Y) 451N(G) 452I(T) 453W(S) 454W(F) 485Y(K) (identity: 33.3 %/39.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1pfx_A_1 identity=39.1%

queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILR-QSFMFYGAGYQVEKVISHPNYDSKTK--NNDIALMKLQ: 352
                :***** * **  **** *       ******   * ****** *         *  **               *   * *  *         ****  * :
1pfx_A_1       1:IVGGENAKPGQFPWQVLLNGKIDAFCGGSIINEKWVVTAAHCIEPGVK----ITVVAGEYNTEETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELD:  96
SecStr          : BT EE  TTS TTEEEEE TTS SEEEEEEETTEEEE GGG  TT  ---- EEEET  BTTS  TT EEEEEEEEEE TTS SSS TTSS  EEEEES:    
ExpBur          :bbeeeebeeeebbbbbbbbbeeeebbbbbbbbeebbbbbbebeeeeee----bebbbbbebeeeebebbbeeeeeeebebeebeeeeeeebebbbbbbbe:    
Contact         :        bb   b                                                                                      

queryA       353:KPLTFNDLVKPVCLPNPGM--MLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRC--NSRY-VYDNLITPAMICAGFLQGNVDSCQGDSGGPLVT: 447
                : *** *  * * *                  ****     *     *   ** *     *        * *     * ****  *  ********** **:
1pfx_A_1      97:EPLTLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRSTKFTIYSN-----MFCAGFHEGGKDSCQGDSGGPHVT: 191
SecStr          :S    BTTB   B   HHHHHHHHTTSEEEEEESS SBTTTB  SB EEEEEEEE HHHHHHH SS   TT-----EEEES SSSS B  SS TT  EEE:    
ExpBur          :eebeeeeebeebebbeeeebeebbeeeebbbbbbbebeeeeeebeebbbbebeebeeebbeebbeeebeeb-----bbbbbeeeeeebbbebbbbbbbbb:    
Contact         :    bbbb bbbb  b  b                                                                                 

queryA       448:SKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMR: 489
                :       * *  ***  **     * *  *     **     :
1pfx_A_1     192:EVEGTSFLTGIISWGEECAVKGKYGIYTKVSRYVNWIKEKTK: 233
SecStr          :EETTEEEE  EEEE SSSS TT  EEEE HHHHHHHHHHHT :    
ExpBur          :eeeeebbbbbbbbbbeebeeeeebbbbbbbbebbebbeeebe:    
Contact         :   bbbb                              b

Protein Model on 1pfx_A_1_B_1 (TEMPLATE: 1pfx )

Input Residue Numbers for Focused Sites