[pdbjlvh2]Protein Model on 1lto_A_1_B

Protein Model on 1lto_A_1_B_1 (TEMPLATE: 1lto )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TMPS2_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [243 aa]	alpha tryptase I :TRYA_HUMAN
2	b		B 1 (B)	polymer(polypeptide(L)) [243 aa]	alpha tryptase I :TRYA_HUMAN	319F(H) 320M(L) 321F(Y) 322Y 389E 392K(P) 393T(P) 394S(P) 395E(F) (identity: 22.2 %/39.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1lto_A_1 identity=39.4%

queryA       256:IVGGESALPGAWPWQVSLHVQN---VHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFY-GAGYQVEKVISHPNYDSKTKNNDIALMKL: 351
                :****  *    ******* *      * **** * * *  *****                 **     *      *   * **         ****  *:
1lto_A_1       1:IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCLGPDVKD---LATLRVQLREQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLEL:  97
SecStr          : BS EE  TTS TTEEEEEEESSSEEEEEEEEEEETTEEEE HHHH SS   ---GGGEEEEE  SBTTTT   B EEEEEE TT S GGGS   EEEEE:    
ExpBur          :bbeeeebeeeebbbbbbbbeeeeebebebbbbbbbeebbbbbbebbeeeeee---eeebebbbbbbebeeeeeeeebeeebebeebeebeebbbbbbbeb:    
Contact         :                      bb                                          bbbb                              

queryA       352:QKPLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATE--EKGKTSEVLNAAKVLLIETQRCNSRYVYD-------NLITPAMICAGFLQGNVDSCQGDSG: 442
                :  *      *  * **       *   **  ***     *       *   **   *   *   *            *   * ***  *   *** ****:
1lto_A_1      98:EEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQR--DSCKGDSG: 195
SecStr          :SS     SSS   B   TT    TT EEEEEES  SBTTB   TT B EEEEEEB  HHHHHHHHHTT SS TTS  S TTEEEE  SSS--B  TT TT:    
ExpBur          :eeebeeeeebeebebbeeebebeeebbbbbbbbbeeeeeeebeeeebbebbebebbebeebbeebbeeeeeeeeeeebeebbbbbbeeee--bbbeebbb:    
Contact         :                                       b  bbbb                                                      

queryA       443:GPLVTSKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYR: 486
                :****   *  *   *  **  ***   *** *  *    ***  :
1lto_A_1     196:GPLVCKVNGTWLQAGVVSWDEGCAQPNRPGIYTRVTYYLDWIHH: 239
SecStr          : EEEEEETTEEEEEEEEEE   SSBTTB EEEEEGGGGHHHHHH:    
ExpBur          :bbbbbebeeeebbbbbbbebebbbeeebbbbbbbbbebbebbee:

Protein Model on 1lto_A_1_B_1 (TEMPLATE: 1lto )

Input Residue Numbers for Focused Sites